Humulus lupulus (common hop): 133792046
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Entry
133792046 CDS
T11341
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03022
Basal transcription factors
hlp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133792046
09124 Replication and repair
03420 Nucleotide excision repair
133792046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlp03021
]
133792046
03036 Chromosome and associated proteins [BR:
hlp03036
]
133792046
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133792046
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133792046
Transcription machinery [BR:
hlp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133792046
Chromosome and associated proteins [BR:
hlp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133792046
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133792046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-GeneID:
133792046
NCBI-ProteinID:
XP_062085938
LinkDB
All DBs
Position
1:48306380..48317068
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYAYMLELKRSLDARGHCLLEMPTGTGKTIALLSLITSYT
LSKPQTPLKLIYCTRTVHEMEKTLAELKLLHDYQLRHLGPQAKILALGLSSRKNLCVNST
VLAAENRDSVDAACRKLTATWVRALAAESPDVPTCEFFEQFDKAGPAAVLPPGVYTLQDL
RAVGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLNKMRQEIDRFKATDAGRLRAEYNRLVDGLAQRGNLPI
SDTWLANPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLEGRLETENVEKEGPVGFVSS
INTHAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGIVCFFV
SYSYMDGIVNSWNETGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSSGRKTLLSQEDLEKMSDRIVEEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccagattgaagatgtgacggtgtacttcccctacgatcacatatacccagag
cagtacgcctatatgctggaactaaagcgatccctcgatgccaggggccactgcctcctt
gagatgcctaccggtaccggcaagaccattgctctcctctccctcatcaccagctacact
ctctctaagccccaaactccactcaagcttatctactgtacccgaaccgttcacgagatg
gagaagacccttgccgagctcaagctcctccatgactaccagctccgccacctcggtccc
caggccaagatccttgccctcggcctctcctcccgcaagaacctctgtgtcaactctact
gtcctcgccgccgagaatcgtgactccgtcgacgccgcctgtcggaagctcactgccact
tgggtccgggcattggccgctgagagccctgatgtccccacttgtgagttcttcgagcag
ttcgataaggccggccccgctgctgtcttgccgcctggggtttataccttgcaggatttg
agggctgtgggaaaggagaaaggatggtgcccctacttcttggcacgacatatggtgcag
tttgccaatgtggttgtttatagttatcagtatctgcttgatccgaaggtggctgggatt
atctccaaggaaatgcagaaggaatctgttgtggtgtttgatgaggctcacaacattgac
aatgtatgtattgaagcacttagtgtaagtgtgaggagacagacacttgaaggagcaaga
aggaatcttaataagatgcgtcaggagattgacaggtttaaggccactgatgctggtaga
ctgcgtgctgaatacaaccggcttgttgatggtttggcacaaagaggaaatcttcccatc
tcagatacctggcttgcaaaccctgccctaccagatgatattttgaaagaggctgtgcct
ggtaacatccgcagagcagaacatttcctgcatgttttgcgtagattggttcagtatctg
gaagggcgtctagagactgaaaatgttgagaaagaggggccggttggatttgtttcctcc
atcaacacacatgctggaattgaccaaaaaacattaaagttttgttatgatcgcctgcac
tcactcatgttgacattagaaattacagatacagatgagttcttacacatccaaacaata
tgtgactttgcaacactcgtggggacatatgcccgtggtttttctattataattgaacct
tttgatgagagaatgcctcatattcctgatcctgttttgcagcttagctgtcacgatgcc
tctcttgcaataaagcctgtgtttgatcgatttcaatctgtagtgattacatctggaacc
cttagcccaattgatctctaccctcgtcttctcaatttcaatccagttgtcagtcgaagt
tttacaatgtccttgactagagattgcatatgcccaatggttctcactcgtggaagtgat
cagcttccagtaagtaccaaatttgatatgagaagtgacctgggtgtagtaagaaactat
gggagactcttgctggagatggtatctgttgttccggatggcattgtatgcttttttgtc
agttattcttatatggatggaatagttaatagttggaacgagaccggcattctaaaggaa
atcatgcaacataagcttgtgtttatcgaaacccaagatgtggtagaaactactttggct
cttgacaactatcgcaaggcttgtgactgtgggagaggtgctgtcttcttttctgttgcg
aggggaaaagtagctgaaggaatagattttgatcgccattatggacgacttgtcatcatg
tttggtgttcctttccaatacacacttagcaagattttgcttgcacgattggaatatttg
cgggatacttttcaaataaaggaaggggattttctgacttttgatgctttgaggcaggca
gctcaatgcgtgggccgagttatccgctccaaggctgattatggtatgatgatttttgca
gacaaaaggtatagtcgtcatgataagcgctcaaaattgcctggatggatactctcacac
ttgcgtgatgcacacctgaatttgagcacagacatggctcttcatatagcacgcgagttc
cttagaaaaatggctcagccatatgataaggctggaagcagtggtaggaaaaccttgttg
tcccaagaagacttggagaagatgagtgaccgaatagtcgaagaaatgttgtactaa
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