Humulus lupulus (common hop): 133794382
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Entry
133794382 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133794382
KO
K13126
polyadenylate-binding protein
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133794382
09123 Folding, sorting and degradation
03018 RNA degradation
133794382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133794382
03041 Spliceosome [BR:
hlp03041
]
133794382
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133794382
mRNA cycle factors
Stress granule specific factors
133794382
Spliceosome [BR:
hlp03041
]
Complex C
Other components
Complex C specific factors
133794382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_10
RRM_7
RRM_3
RRM_RdRP1_2
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
133794382
NCBI-ProteinID:
XP_062087589
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All DBs
Position
8:7115130..7118246
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AA seq
493 aa
AA seq
DB search
MVAEVAAPSRTRRPPETTVLPVPEANLHKMSLYVGDLHPSVEETDLIETFRFMGPLASVR
LCRDFFTGKSLCYAYINFFSHSHASKALDCLNHTELKGKPIRIMWSQRDPLPRKTGVGNI
FVKNLDRSITSAELQEMFRKYGNILSCKVAEANGESKGFGFVQFDSEDSAMAAVGALHNS
KIEGKKLYVTKFVKRTERTAANEEETSFTNLFVKNLDIDISVDCLRNKFSQFGKVYSLVI
LKDYEGNSRGMGFVKFVSPEDAKNAVERLNGSLLGSKHMFVERARKKATTGELFKTGHNM
FNCQFDKPSNLYVTNLDIHVDDNKLRNHFSCCGNITSVRVMRDKNGISKGFGFVRFSTHK
EAKNALKTLDGTVLEQKSLRVTFAWQKEYHRKETKLYYPQPSSKDLDIPNWDNASCSFTF
GQYNLGPSSSLHSPLPYQPFEYFNFGHNVGHEQYPWLLQNYLQQFSTCVPTRQMQRQGNQ
NFRPSQSCVLTDI
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggtggcagaagtggctgctccgtctagaacacgacgaccacctgaaacaactgtactt
ccagttccagaggctaatcttcacaagatgtcgttgtatgtgggtgacctgcacccaagt
gtcgaagaaactgacctcatcgaaacgtttcgtttcatgggtccccttgcctccgttcgc
ctctgccgagactttttcaccggaaaatccctttgttatgcctacatcaacttcttttct
cactcccatgcatctaaagctctagactgtctgaatcacactgaactaaagggtaagccc
ataagaataatgtggtctcaaagagatcctcttccgagaaaaactggtgttggcaatatc
ttcgtgaagaatctcgaccgttcgattaccagtgctgaattgcaggaaatgtttcgcaaa
tatgggaatatactttcttgcaaggttgctgaagcaaatggtgaaagcaagggtttcggg
tttgtccagtttgattcggaggactctgccatggctgctgttggtgctctccataattca
aagatcgaagggaaaaagttatatgtgacaaaatttgtcaagagaactgagaggacagca
gccaatgaagaagaaacatcatttacaaatctgtttgtgaaaaatcttgatatagatatc
agtgtggattgtcttcgaaacaaattctcacagtttggaaaggtttatagtctagtcata
ctgaaggattacgagggtaactcaaggggtatgggttttgtaaaatttgtgtccccggaa
gacgctaagaacgctgttgagaggttgaacggttcactgttaggatcaaagcacatgttc
gtggaaagggctcgtaagaaagctacgacgggggaacttttcaaaactggacacaatatg
ttcaactgccagtttgataagccttcaaatttgtatgttacgaacctagacatacatgtg
gacgacaacaaactacgaaaccattttagttgctgcggaaatataacatctgttcgagtg
atgcgagataagaatggcatcagcaaaggatttggttttgttcgtttctctactcataaa
gaagccaagaatgctctcaaaacacttgacggaactgttctagaacaaaaatctttgcgt
gtgaccttcgcttggcagaaagaatatcaccgcaaggaaactaaactctactaccctcag
ccatcttcaaaagatttggatattccaaactgggataatgcttcttgttcattcactttt
ggccaatacaacttgggtccttcctcctctttacactctccacttccataccagccattt
gagtatttcaattttggccataatgttggtcatgaacagtatccatggcttttacagaat
tacctgcaacagttctccacatgtgtgccaacaaggcaaatgcagcggcagggtaatcag
aatttccgacccagtcaatcttgtgttcttaccgatatatga
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