Humulus lupulus (common hop): 133794825
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Entry
133794825 CDS
T11341
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133794825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlp03021
]
133794825
Transcription machinery [BR:
hlp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
133794825
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
WHD_SOWAH
zf-C3HC4_3
DZR_2
TerY_C
DUF7573
Zn_ribbon_6
Motif
Other DBs
NCBI-GeneID:
133794825
NCBI-ProteinID:
XP_062088234
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All DBs
Position
8:16767980..16776621
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AA seq
536 aa
AA seq
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MSMDLILKPTCSGCGSPTELYGSNCKHLTLCLTCGKKKAESRATCPECGATVTRLIREYN
VRASTSNDKNYFIGRFVTGLPSFSKKKNAENRWSLQKDGLQGRQLTDSLREKYKNKPWLL
EDETGQYQFQGHLEGAQSATYYLLMLQGKEFSAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYQRWMMKAANNGPAAFGEVDKFDDKESGAAGGRGRKKTSGDEGEGNVSDKG
EEDEEEEAARKSRLGLNKRAGEDDDDEGQRGGDLDLDDDDVEKGDDWEHEEIFTDDDEAV
GNDPEEREDLAPEVPAPPEIKQDEDDEDDDNEEEGGLSKSGKELKKLLGRTSGLNDSDAD
DDDDDEDMDDDINVSPTVAPKQKDGPKEEPAENSPLKSTPSASTKGATSNSKSAKGKRKL
NGDDAKPSNGAPPKKVKTENEQKSSEPTPASKSNVPSKGTPAVSKASGTSSAGPVTEEEI
RAVLMQKTPVTTQDLVAKFKARLRSPEDKNAFAEILRRISKIQKTNGSNFVVLREK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggatctgatcctgaagccgacttgcagtggatgtgggtcaccgacggaattg
tacggaagtaattgtaagcacttgactttgtgcttgacctgtggaaaaaaaaaggctgag
agccgtgccacatgtcccgagtgtggcgccactgtcacccgtttaataagagaatataat
gttcgagccagtactagcaacgacaagaactactttattggtagatttgtgactggcttg
ccaagcttttcaaagaagaaaaacgctgaaaacagatggtctctccagaaagatggattg
cagggacgccagcttactgattccttgcgggagaagtacaagaataaaccttggctcttg
gaggatgaaacaggccaatatcaattccagggtcatcttgaaggggcacaatcagcaact
tactacctgctgatgttgcaggggaaagagttttctgctattcctgctggttcttggtac
aattttaacaaggttgcacagtataagcaacttactttggaggaagcagaagagaagatg
aaaaataggaaaaagactgctgatggctatcaaagatggatgatgaaagcagcaaacaat
ggacctgctgcatttggtgaagtggataagtttgacgacaaggaaagtggtgcggctggt
gggagggggcggaagaaaacctcaggtgatgagggtgaaggaaatgtctcagacaaaggg
gaggaggatgaagaagaagaagcagccaggaagagtaggcttggtctaaataaaagagct
ggcgaggatgacgatgatgaaggtcaaaggggaggtgatctcgatttggatgatgatgat
gttgagaagggtgatgattgggagcatgaagaaattttcaccgatgatgatgaagcagtt
ggtaatgatccagaggaaagggaggatctggcacctgaagttccagctcctccagaaatt
aagcaggacgaagatgatgaggatgatgataatgaagaagagggtggactaagcaaatca
gggaaagagttgaagaagctgctaggccggactagtgggttgaatgattcagatgcagac
gacgatgacgatgacgaggatatggatgatgacattaatgtctcacccacggtggctcca
aagcagaaggatggacctaaagaagaacctgctgagaatagtccccttaaatctacgcct
tctgcatccactaaaggagccacatcaaactctaagtccgcaaaaggaaagagaaaacta
aatggtgatgatgccaaaccgtccaatggtgcacctccaaagaaggtgaagacagaaaat
gaacaaaaatcttctgagcctacacccgcttctaaaagtaatgtgccttctaaaggcaca
ccggcagtctctaaagccagtgggacatcgtctgctggacctgttactgaagaagaaatt
agggctgttttaatgcaaaagacaccagtgacgactcaggatcttgttgccaaattcaaa
gcgagactcagatcccctgaggataaaaatgcatttgcggaaattcttaggagaatttct
aagatacaaaagaccaatggatctaatttcgttgtgttgagggagaaatga
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integrated database retrieval system
