Humulus lupulus (common hop): 133795004
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Entry
133795004 CDS
T11341
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03430
Mismatch repair
hlp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133795004
03460 Fanconi anemia pathway
133795004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133795004
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
133795004
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133795004
NCBI-ProteinID:
XP_062088445
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Position
1:79823665..79835843
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AA seq
928 aa
AA seq
DB search
MDASFLPSDAPTIKPINKASVHRICAGQVIFDLSSAVKELVENSLDAGATGIEIALKEYG
KECFQVIDNGSGISPNNFKVIALKHHTSKLVDFPDLQSLTTFGFRGEAISSLCSLGNLTI
ETRTKNETVATHLTYNHSGLLVAERKTARKIGTTVTVKNLFSNLPVRSKEFHRNIRKEYG
KLISLLNAYALIAKRVRLVCTNTTGRNVKSVVLKTQGSDSLKDNIVTLFGMGIYNCLEPL
DLCISDGCKVDGFLSKAGQGSGRNMGDRQFFFVNGRPVDMPKVTKLVNELYRGANSQQHP
IAILNFTIPTRACDVNVTPDKRKIFFSDEGSILHALREGLQLIYSSNHARFVVNKVEEPA
KAVISPSCSSQQKSYTSLKPLSQDESGPEGESEDHVLEDDNQFKTVENEVQDIHGVERFN
CNSQMKDFTLRGHKIKESDDSRQFTTHQDSNTTDQKALPFAKTVDNSTATNKDSYRSSSV
QTLLDKFISANKRKHENISTVLSEMPVLRNQIHHWQAKNSNSDVKVVVPRSSVSPLQVDH
YLEAEKTEPSKHLRADKVASKVANPLSSEASTTGRESQEDIDAKEKANPLANISSSAASS
EDGVPVAHISSNAASSEDLASVPEGVSVQAPLDSSSQLLGVSKPSSGLEICSTLQFSLQD
LKNRRQRRLSLLHSSNDNQRTKGKRCYAAATLELSQPVNEDRKERDLLEATKELERLFRK
EDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERFAQSTILNLQPLLRPLRLE
LSPEEEVVVSMHMDIFRKNGFVLEEDLDAPPGHHFRLKAVPFSKNITFGVEDVKDLISTL
ADGHGECSIIGSYRTDTADSVCPSRVRAMLASRACRSSVMIGDALGRNEMQKILEHLVGL
KSPWNCPHGRPTMRHLVDLTTIYKSEEE
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatcattccttccttccgatgccccaactataaagcccattaacaaggcttcg
gttcacagaatctgcgccggccaagtcatttttgacctctcgtcggctgtcaaggagttg
gtcgaaaacagtttagacgccggcgccaccggcattgagatcgctctgaaagagtacggc
aaagagtgcttccaggtgatcgacaatggctccggcatttcgcccaacaacttcaaagtc
attgcccttaagcatcacacatctaaattggttgatttccccgaccttcagtcgctgacg
acgttcggttttcgcggcgaggccataagttccctgtgctcgttggggaatttaacgatc
gaaaccaggacaaaaaacgagacggttgcgacgcacttgacttacaatcattcgggattg
ttggttgctgagaggaagacggcacggaaaattggaaccactgttactgtcaagaatttg
ttttcgaatttacccgtgcggagcaaggaatttcatagaaacataaggaaggaatatgga
aagcttatttccttgctgaatgcctatgctcttattgcgaaaagggttcggttagtatgc
accaacacaacaggtagaaatgtaaagtctgtggtccttaaaacacaaggaagtgattct
ctcaaagataacattgtcacactttttggcatgggtatctataactgcttagaacctctg
gatttatgcatatctgatggttgcaaggttgatggttttctgtctaaggcaggacaaggt
agtggacgcaatatgggcgatagacaattcttttttgtaaatggtcgacctgtggacatg
cctaaagtcacaaagcttgtgaatgagttatacagaggtgccaactcccagcaacatccc
attgcaattttgaattttactattccaactagagcatgtgacgtcaatgttactcctgat
aaaaggaaaatattcttttctgatgagggttccatattgcatgcactaagggagggttta
caactgatttattcctctaaccatgctcgattcgttgttaataaagttgaggagcctgcc
aaggctgtaatttctccatcatgttcttctcagcaaaaatcttacacatctttgaaacca
ttatctcaggatgagagtggtcctgaaggtgaaagtgaggaccatgttttagaggatgat
aatcaattcaaaactgtggaaaatgaagttcaagacattcatggtgtagaaagatttaat
tgcaatagtcaaatgaaggactttactctaagaggacataaaattaaagaatctgatgac
agtagacagttcactactcatcaagatagtaacacaactgatcaaaaagcgcttcctttt
gcaaaaactgttgataacagcactgctacaaataaagattcatatcgttcaagctctgtt
caaacattgcttgacaaatttattagtgcaaataaaaggaagcatgaaaatatcagtaca
gtactatctgagatgcctgtcctaagaaatcagattcatcattggcaggccaagaatagc
aattctgatgtgaaagttgtagttccaagatcctcggtaagccctctccaggttgatcat
tatttagaagcagagaagacagagccgtccaagcatttacgagcagacaaggtcgccagt
aaagttgcaaatccactttcttctgaagccagtacaactggcagagaatctcaagaggat
attgatgctaaagagaaagcaaatcccctcgctaatatctcatcaagtgctgcatccagt
gaggatggagttcccgttgctcatatctcatcaaatgctgcatccagtgaggatctcgct
agtgtgcctgaaggtgtttcggttcaagctcctttagattcctctagtcagctgctgggt
gtttcaaagccttcttctggtcttgaaatatgttccaccttgcaatttagtttgcaagac
ctaaagaacaggaggcagcggaggctgtctctattgcattccagtaatgataatcaaagg
acaaaggggaaaaggtgctatgctgctgccacactagagctttctcaaccagtaaatgaa
gatagaaaggaaagggatttacttgaagctactaaagagttggaaagacttttcagaaag
gaggattttggtaggatgaaggtaattgggcaattcaaccttggattcatcattgggaag
ttagatcaagatctatttattgttgatcagcatgctgctgatgaaaaatacaattttgag
cgtttcgcacaatcaaccatcttaaacctgcagcctttgcttcggccattaaggttggaa
ttatctcctgaagaagaagtagttgtttccatgcacatggatattttcagaaaaaatgga
tttgttttggaagaggatctagatgcaccaccagggcaccactttagactgaaagcagta
cccttcagtaaaaacataacttttggagttgaagatgtgaaggaccttatttcaactctg
gctgatggtcatggggaatgctcaataattggtagttacaggacggacactgctgattct
gtttgcccgtcacgagttcgtgctatgctggcgtcacgtgcttgcagatcatctgtcatg
attggggatgctcttggaagaaatgagatgcagaagatacttgagcatttggtagggttg
aagtctccttggaattgtccacatggaaggcccacaatgcgccacttggtagatttgaca
accatatacaagagtgaggaagaatga
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