Humulus lupulus (common hop): 133796377
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Entry
133796377 CDS
T11341
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03013
Nucleocytoplasmic transport
hlp03015
mRNA surveillance pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133796377
09122 Translation
03013 Nucleocytoplasmic transport
133796377
03015 mRNA surveillance pathway
133796377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133796377
03041 Spliceosome [BR:
hlp03041
]
133796377
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133796377
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133796377
Spliceosome [BR:
hlp03041
]
Complex C
Other components
EJC/TREX
133796377
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133796377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133796377
NCBI-ProteinID:
XP_062089846
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Position
8:complement(23577215..23581293)
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AA seq
428 aa
AA seq
DB search
MGEVKDNDGYEEELVDYEEEDQNAPNSVSAKPSGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNVKVHKDLLKNECPHIVVGTPGRILA
LARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLMETEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADSNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtcaaagacaacgatggttacgaagaagagctcgttgactacgaagaggaa
gaccagaatgcccccaactccgtctccgctaagccgtctggcgaatctgtcaagaagggc
tatgttggtatccacagttcgggtttcagagacttcctgttgaaaccggagcttctacga
gcgattgtagattcgggattcgaacatccttccgaagtgcaacatgagtgcatccctcaa
gctatcttaggaatggatgtcatttgtcaagcaaaatctgggatggggaaaactgctgtt
tttgttctttcaactcttcaacaaatagaaccagttgctggtcaggttgctgctcttgtt
ctctgccacacaagagaattagcttaccagatctgtcatgaattcgagaggttcagcact
tatttgcctgacttaaaggttgctgtattctatggcggtgtcaatgtcaaggttcacaag
gatctgctaaaaaatgaatgccctcatattgttgttggaacacctgggagaatattggct
ctagctagagataaggatcttggactaaagaacgtgaggcatttcattcttgatgaatgt
gataagatgcttgaatctcttgatatgaggagagacgttcaagagatttttaagatgact
cctcacgataagcaagtgatgatgttttcggcaacactaagcaaagagattcgccctgtc
tgcaagaaatttatgcaagatcccatggaaatctatgtagatgatgaggccaaattaacc
cttcatggtcttgtacagcactacattaaattgatggaaacggagaaaaatcgcaagttg
actgatctcctagatgctttggatttcaatcaagttgttatttttgttaaaagtgttagc
agagctgctgagttgaacaagctacttgctgatagtaacttcccatctatctgtatccat
tctggaatgtctcaggaagagaggttgaagcggtacaagggtttcaaggagggacactcc
cgaattcttgtagcaactgatttagttggaagagggattgacattgagcgcgttaatatt
gttattaactatgatatgccagattctgctgacacatacctacacagggtgggcagagct
ggcaggttcggcaccaaggggcttgcaattacatttgtgtcatctgcttctgactctgaa
gttcttaatcaggtccaatccaggtttgaggtggatataaaagagcttcctgagcaaatt
gatacttctacatacatgcaagtatga
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