Humulus lupulus (common hop): 133796920
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Entry
133796920 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133796920
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133796920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133796920
03016 Transfer RNA biogenesis [BR:
hlp03016
]
133796920
Enzymes [BR:
hlp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
133796920
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133796920
Transfer RNA biogenesis [BR:
hlp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133796920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
TUTase
Polbeta
DNA_pol_B_palm
Nrap_D2
PRR22
Motif
Other DBs
NCBI-GeneID:
133796920
NCBI-ProteinID:
XP_062090607
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All DBs
Position
8:40127276..40134741
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AA seq
532 aa
AA seq
DB search
MEETSQSQSFIYETLGTLFFPSSDQSSPSDHPEPYSVYRNEISLSTIPVPSFDVDAAAAP
DFFSLDAAADEHSSHPVLESPARPRGAEPKIPVPEDERRLESSWFRGNSKFKSPMLQLHK
EIVDFCDFLSPTPEEKDSRNAAIERVSDVIKYIWPNCEVEVFGSFRTGLYLPSSDIDVVI
LGSGILKPQQGLQALSRALSQRSIAKKIQVIAKARVPIIKFVEKRSGVAFDISFDLQNGP
VAAEFIKDAVSRLPPIRPLCLILKVFLQQRELNEVYSGGLGSYALLTMLMAMLQSLRESE
DNLGILLVNFFDFYGRKLNTPDVGVSCNGGGTFYSKNDRGFLNRGRPFLISIEDPQAPEN
DIGKSSFNYFQIRSAFAMAFTTLTNPKVILGLASNRSILGTIIRPDAVLLERKGGSNGQM
TFTSLLPGAGEPLHSQYDHQEILCNWQLDDEEPLPRGGDGAGEFSERSSGKKRKSSTKKD
KHVKKAKETNGDMGSASLRESGSRKEVVKKKHWRRNQADTNGYGRSLSPWSH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacctcgcaatcccaaagtttcatctacgaaaccctaggtactctattcttc
ccgtcctcggaccaatcgtcaccgtccgatcaccccgaaccctattccgtctaccggaac
gagatttctctctccactattcctgtgccatcgttcgacgtcgacgctgccgccgctcct
gatttcttctcccttgacgctgccgcagatgaacactcgtcccacccagttctagaatcc
cccgcgcgccctcgtggagccgagcctaagataccggttcctgaggacgagcggcggctt
gagagcagttggtttcgtggcaatagtaaattcaagagccctatgcttcagctacataag
gagattgtggatttttgcgattttctatctccaactccagaagagaaagattcccgtaat
gcagctattgaacgtgtttctgatgttatcaagtatatttggcctaactgcgaggtagaa
gtttttgggtcattcaggaccggtctttatcttccaagcagtgacattgatgttgtgatt
ctaggctcaggaatcctgaaaccacagcaaggtttgcaggctctttctcgggcattgtca
cagaggagcattgcaaaaaagatacaggtgattgcaaaggctcgtgtgccaattattaaa
tttgtagaaaagagaagtggtgttgcatttgatataagttttgatctacagaatggacca
gtggctgctgagtttatcaaggatgcagtttctagattgcctcctatacggcctttgtgt
ttgattttaaaagtatttttacaacagagggagcttaatgaggtgtactctggcggatta
ggttcttatgcacttctcaccatgctcatggcaatgttgcagagcctacgggaatcagaa
gataacttaggaattcttttggtaaacttctttgatttttatgggcgtaaattgaacacg
ccagatgttggtgtatcctgcaatggtggaggcaccttttactcaaagaatgatagaggt
ttcttaaatagaggacgcccttttcttatatccattgaggatcctcaggcaccagagaat
gacattgggaagagctcatttaattattttcagattaggtcagcttttgcaatggccttc
acaaccttgacaaatcctaaggttatcttgggcttagcctccaacaggagcattctaggt
accataatcagaccagatgcagtcttgctggaacgcaagggaggatccaacgggcaaatg
acttttactagcttgcttccgggagctggggagccattacattcccagtatgatcatcag
gagattctgtgcaattggcaattagatgatgaagaacccctgccacggggaggtgatggg
gctggtgagtttagtgagcgttcctctggtaaaaagaggaaatcgtctactaagaaggat
aagcatgttaagaaagcaaaagagacaaacggagacatgggcagtgcaagtcttcgagaa
agtggctcgagaaaagaggtagtaaagaaaaaacattggagacgtaaccaagctgatacc
aatggttatggtcgtagcttgtctccatggagtcactag
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