Humulus lupulus (common hop): 133797012
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Entry
133797012 CDS
T11341
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133797012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133797012
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133797012
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
133797012
NCBI-ProteinID:
XP_062090746
LinkDB
All DBs
Position
8:complement(44160574..44168487)
Genome browser
AA seq
1086 aa
AA seq
DB search
MQRQKTILSFFQKPAPANLSSGRQLVSQVPVTESALEIIGTDTPPEKVPRQIFPASYVAN
ESKTDSSLFSSIMHKFVKPNEREKFPQRNKPHGSCVDICMGSEQSNEPKQLSKPGLATQP
SGEIGVVKSNGNADQSCIVHVGSDDDILGPETPGTQRFVPRLKRIQDDDPASKDKYDRLL
GSSKKLKLSEESTGLNKNHWEISDTASKFEWLDPSRIKDANGRKRDDPLYDSTTLYIPAD
ALKKMSASQKQYWNVKCQYMDVMLFFKVGKFYELYELDAEIGHKELDWKITLSGVGKCRQ
VGVPESGIDDAVQKLVARGHKVGRIEQLETSGESKARGSNSVISRKLIQVVSPSTASDCN
LGPDAVHLLAIKEGNSELENGSTVYGFAFVDCAALKFWVGSIKDDASFAGLGALMMQVSP
KEVLYESRGLSKEVQKALRKYSLTGSSAPQLTPMQSATDFADASEVRSLIQLKGYFKGSS
NMWDHSLGNVMHHDITLSALGGLINHLSRLMLDDVLQNGDVLPYQVYRGCLKMDGQTLLN
LEIFNNNADGGTSGTLYKYLDNCVTSSGKRLLRRWICHPLKDIDRINYRLNAVEALMQHS
EIMLVIAQYFRKLPDLERLLGRIRASVKSSATLSVPVYGKKVLKQKVKVFGTLVKGLRVG
FDLLLLLEKERHEFSLLSKNFSLPLLSGSGGLDQFLSQFEAAVDSDFPNYQNHDVTDRDA
EIISILIELFIEKASEWSQIIHAINCIDVLRSFAVTASFSSGTMSRPVILPPTKNATSNE
EARHPILKIKGLWHPFAFGDNGRVPVPNDVVLGEDANGYCPRTLLLTGPNMGGKSTLLRS
TCLAVILAQLGCYVPGEMCVLSLVDTVFTRLGATDRIMTGESTFFIECTETASILHHATQ
DSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVLLQH
MACSFKPKSESFSQNEELVFLYQLTSGACPESYGLQVATMAGIPEKVVNAASKAGREMKK
SIVGDSFKSSEGRAEFSTLHEEWLKSLMTVSLIGNSGSPDEEDDIFDTLLCLWHELKSSY
RSGQIK
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtcagaagacgatcctctctttcttccagaaacccgcgccggccaacctaagc
tccggcagacagcttgtctctcaagttccggtgacggaatcggctttggaaatcatagga
accgacactccgccggagaaggtgcctcgtcagatttttccagccagttatgtcgcaaat
gagagcaaaaccgattcttcattgttctcgagtattatgcataagtttgtgaagcccaat
gagagggagaagttcccccaaaggaacaagccacatggcagctgcgtggacatttgtatg
ggctctgaacagtctaatgaacccaaacaattgtctaaaccgggattggctactcagcct
tcaggagagataggtgttgtgaaatccaatgggaacgctgatcaaagttgcatcgttcat
gttggaagtgatgacgatatccttggaccagaaacgccaggaacacaacgttttgttcca
cgattgaagcgaattcaagatgatgatcctgcatccaaggataagtatgacagattgctg
ggttctagcaaaaagctaaaactctcagaggaatcaacaggtttgaataagaatcattgg
gaaatatctgacacggccagcaagtttgagtggcttgatccatctcgaatcaaagatgct
aacgggaggaagcgtgatgaccctctttatgatagcacaacactttatatacctgctgac
gcattgaagaaaatgtctgcatcacaaaaacaatattggaatgtcaaatgccaatatatg
gatgtcatgcttttctttaaagtgggaaaattttatgaactatacgaactagatgctgaa
ataggtcataaagagcttgattggaaaataacattaagtggagttggaaaatgccggcag
gttggtgtccctgaaagtggtattgatgatgctgttcagaagctggttgcacgtgggcat
aaagttggccgaattgagcagttggaaacatctggagaatcgaaggctagaggttcaaat
tctgtaatatcaagaaaactaattcaggtggtctcaccatcaactgcaagtgattgtaat
ttaggtcctgatgctgttcatcttcttgcgataaaagagggtaactccgagctggaaaat
gggtcaactgtgtacggttttgcttttgtagactgtgctgctttaaaattttgggttggt
tccatcaaagatgatgcatcctttgctggtttgggggctttaatgatgcaagtgtcacct
aaagaagttttgtatgaaagcagagggttgtccaaagaagttcagaaagcgctcagaaag
tactctttaacaggttcttcagctccacaattgactccaatgcagtcagctactgatttt
gcagatgcttctgaagtaagaagcttaattcagttgaaaggttacttcaaggggtcttca
aatatgtgggatcattctcttggcaatgtgatgcatcatgatataaccttatctgctctt
ggtggacttatcaatcatctatctagattgatgttagatgatgttttacaaaatggggat
gtattaccataccaagtgtataggggttgcctcaaaatggatggacagacactgttaaat
cttgagattttcaataacaatgccgatggtggtacttctggtacattatacaaatatctt
gataattgtgtgacatcatctggcaagaggcttttaaggaggtggatctgccatccactg
aaagatattgacagaataaattataggcttaatgctgttgaagctctaatgcaacattca
gaaattatgctagttattgctcagtattttcgcaagcttccagacttggaaaggttgctt
ggacggattagggctagtgttaagtcatcagctactctgtcagtgcctgtatatggaaaa
aaagtgctgaaacagaaagttaaagtatttgggactctagtgaaaggtctccgggttggc
tttgatttgttactgttattagagaaggaaagacatgagttttctcttttgtcaaaaaat
tttagtcttcctcttttgagtggaagtggtgggcttgatcaatttctttcccaatttgaa
gcagctgtagatagtgacttccctaattaccagaatcatgatgtaacagatagagatgcg
gaaattatctctattctgattgagctattcattgagaaagcgagtgaatggtcccaaatt
attcatgctatcaactgcattgatgtgctaagatcctttgcagttacagctagcttttct
agtgggacaatgtcaagacctgtcattttgcctccaacaaaaaatgcgacttcaaatgaa
gaagccagacatcctatacttaaaattaaagggttgtggcatccatttgcctttggagat
aatggacgagtgcctgtcccaaatgatgtagtccttggtgaggatgcaaatggctattgc
ccacgcactttgttattaaccggacctaatatgggtggtaaatcaactctcttgcgttcc
acctgtctagctgttatactggctcagctgggctgctacgtgcctggtgaaatgtgtgtt
ctctcacttgtggatactgtatttacacggcttggtgcaactgatcgaatcatgacaggc
gagagtaccttctttattgagtgcacagaaacagcatcgatacttcaccatgcaactcaa
gattctttggttattcttgatgagttgggccgaggaacaagcacctttgatggatatgcc
attgcctatgctgtatttcgacatctcattgaaaaagtcaattgccgattactctttgca
actcactaccacccactgacaaaggaatttgcttctcacccacatgtcctcctccaacac
atggcctgctctttcaagcccaaatctgaatcattttcccagaatgaggagcttgttttt
ctataccagctcacctcaggagcctgtccagagagctatggcttgcaagtggcaactatg
gccggaatcccggagaaggtggtcaatgctgcttcaaaggctggccgagaaatgaagaaa
tcaatagttggagatagctttaagtctagtgaagggagagcagagttctcaactctccac
gaggagtggttaaagagtctaatgactgtctcactgattggaaattctggttctcctgat
gaagaagatgatatttttgacacgttgctttgcttgtggcatgagctaaagagctcgtat
aggtcggggcaaataaagtga
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