Humulus lupulus (common hop): 133797278
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Entry
133797278 CDS
T11341
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03030
DNA replication
hlp03420
Nucleotide excision repair
hlp03430
Mismatch repair
hlp03440
Homologous recombination
hlp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133797278
03420 Nucleotide excision repair
133797278
03430 Mismatch repair
133797278
03440 Homologous recombination
133797278
03460 Fanconi anemia pathway
133797278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlp03000
]
133797278
03032 DNA replication proteins [BR:
hlp03032
]
133797278
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133797278
Transcription factors [BR:
hlp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133797278
DNA replication proteins [BR:
hlp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133797278
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133797278
MMR (mismatch excision repair)
133797278
DSBR (double strand breaks repair)
HR (homologous recombination)
133797278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-like
Motif
Other DBs
NCBI-GeneID:
133797278
NCBI-ProteinID:
XP_062091120
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All DBs
Position
8:complement(54189685..54192708)
Genome browser
AA seq
621 aa
AA seq
DB search
MPVHLTPNAISAIIGGDVNSKPLVQILDIKLIGNSQERFRLLISDAVSTQHAMLATQLND
RVKDGSIKKGSVIQLIEYICSVVQKRKIIVILSMETIIPDCDMIGNPKFSLESDSTAQKM
QPNVNLQQPARVSNNRYQPPPVANVQDFRPAVQPPYQPPSNYKSHGTILKNEAPARIIPI
AALNPYQGRWAIKARVTAKGELRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY
DVIEVGKVYMLSKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCPDEDGSIPKQQFSFRPI
SDIENAESNSILDVIGIVVSVNPSVPILRKNGMETQRRILNLKDWSGRSVELTLWGEFCN
REGQKLQDMSDTGFCPVLAVKAGKVNDFSGKSIGTISATQLFINPDFPEAHSLRDWFDQG
GKDAVSQSISRDMVPGAPKNEIRKTISQIKDEGLGRSDKPDWVTVKATITFMKTDTFCYT
ACPLMIGDRQCSKKVTRSGSRWQCDRCNQEFDECDYRYLLQAQIQDHTGLTWVTAFQESG
EEILGCSAKELYLLKFEEQDDARFGSIIGQRVFNQFFFRLKIKEEMYGDEQRVKITVLKA
DKVNYSSESKYLLESILKPLR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcacctaacgcccaacgccatttcggccatcataggcggcgacgtgaactcg
aagccgctcgtccaaatcctggatatcaagctcatcggtaactcgcaggagaggttccga
ctcttgatctcggacgcagtttccactcagcacgcgatgcttgcaactcagctcaatgac
cgagtcaaggacggtagcatcaagaaaggatcggtcatccagctgatcgaatacatctgc
agcgttgtccagaaacgcaagataattgtgattttgagcatggaaactattataccggac
tgtgatatgattgggaatccaaaattttctctcgaatctgattcaacagctcagaagatg
caaccgaatgtcaatctacagcagccagctagggtttccaataaccgttaccaaccacct
cctgtagccaatgtgcaggatttccggcctgctgttcaacctccttaccaaccaccttct
aattacaaaagtcatggcactatccttaagaatgaggcacctgctcggatcattcctatt
gctgcactgaatccttaccaaggcaggtgggctatcaaggcaagagtaacagcaaaaggg
gagcttcgtcggtataataatgcccggggagatggaaaagtattctcctttgaccttctc
gactctgatggaggggaaatacgtgtaacctgcttcaatgctgttgttgaccgcttttat
gatgttatagaggttggtaaagtttacatgctttcaaaaggtagcttaaaacctgctcag
aagaacttcaaccatctgaaaaatgaatgggaaatatttctagaggcaacttcaactgtt
gatctttgccctgatgaagatggttctattccaaagcagcagttttcttttaggcctatt
agtgatattgaaaatgctgaaagtaactctattcttgatgttatcggtattgtcgtatcc
gtgaatccttctgttcctatcttgagaaagaatggaatggaaactcagagaagaattttg
aatcttaaggactggtcaggcaggagcgttgagctaaccctatggggggagttctgtaac
agagaaggtcagaagctgcaggatatgtctgacactggattttgtcctgttttagcggtt
aaagcaggcaaggtcaacgacttcagtgggaaatcaataggtacaatatctgccactcaa
ctcttcataaatccagatttcccagaggctcatagtttgagagactggtttgatcaaggt
ggcaaggatgctgtatcacagtccatttctagggacatggtgcctggagcgcctaagaat
gagattcggaaaactatatctcaaatcaaagatgaaggtctaggaagatcggataaacca
gactgggtcactgtgaaggctacaataactttcatgaaaaccgatactttctgctacaca
gcatgcccgttgatgatcggagataggcagtgtagcaaaaaggtgacaaggtcaggaagc
agatggcagtgtgacagatgtaatcaagaattcgacgagtgcgattacagataccttctt
caagcccaaattcaagatcatacaggattgacttgggtgacagcatttcaggagtctggg
gaagagattttgggttgctcggcgaaggagttgtacttgttgaagtttgaagaacaggat
gatgccagatttgggtccataattggacagagggtttttaaccaatttttttttaggctc
aagattaaagaggagatgtacggtgatgagcaaagggtgaaaatcactgtattaaaggct
gataaggtgaactactcttcagagagcaaatacctgcttgagtcaatattaaagccctta
cggtaa
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