Humulus lupulus (common hop): 133798555
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Entry
133798555 CDS
T11341
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03013
Nucleocytoplasmic transport
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133798555
03015 mRNA surveillance pathway
133798555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133798555
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133798555
mRNA cycle factors
P-body specific factors
133798555
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
133798555
NCBI-ProteinID:
XP_062092881
LinkDB
All DBs
Position
8:complement(150660904..150671395)
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AA seq
1183 aa
AA seq
DB search
MDHPEDEGRVGGGEHNGKQNEEEAVARLEEIKKSIEAKMTLRHGNLNPERPDSGFLRTLD
SSIRRNTAVIKKLKQINEEQREGLLDDLRSVNLSKFVSEAVTSICDAKLRSSDIQSAVQI
CSLLHQRYKDFSPSLVQGLLKVFFPGKSGDDSDTDRNLKAMKKRSTLKLLLELYFVGVIE
DSAIFVSIIKDLTSIEHLKDRDTTQTNLSLLASFARQGRIFLGLPLTGQEVYEEFFKGLN
ITADQKKFFRKVLHAYYEAASELLQTEHTSLRQLEHENAKILNAKGELSDENVATYEKLR
KSYDQLYRNISSLAEALDMQPPVMPEDGHTTRVTSGEDASSNSAGKDSSVLEAIWDDEDT
RSFYECLPDLRAFVPAVLLGEAESKLNEQSVKTQEQSTELAPESDQVQQTAQDTGEIFTD
SGASQEGRSAEKGKEKEEKDKERSKDPEKEKGKEKDADKKGDTEKEKLKSIEGTNLDALL
QRLPGCVSRDLIDQLTVEFCYLNSKASRKKLVRALFNVPRTSLELLPYYSRMVATLSTCM
KDVSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLD
DFSHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYY
LCKPPERSARIAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWKECEPYLLKCFMK
VHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRLAHMRFL
GELYNYEHVDSSVIFETLYLILVFGHGSPEQDLLDPPEDCFRMRMVITLLETCGHYFDRG
SSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMTRYSSIEEVSSALVELEE
HERSLPSDKTSSEKHSDTEIRSTFNSISGNGQSAVNGNEGNGGLHDDLGDSDSDSGSGTL
DPEGHDEEELDDENHDEECDSEEEDDDGGGPASDEDEVHVRQKVMEVDPHEAASFEQELK
AVMQESMEQRRQELRGRPTLNMMIPMNVFEGSARGIGGESGDEALDDEGGGSKDIQVKVL
VKRGNKQQTKQMYIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGLGTQT
LNHVQGGSSRVSTRGHLWEGGSGRGGTRHRQYSGGGIFYNRKK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggatcacccagaggatgaagggcgtgttggtggaggtgaacataatggaaagcaaaat
gaggaggaggctgttgctcgacttgaggagatcaagaaatcaattgaagcaaaaatgact
cttcgacatggcaatttgaatcctgaaaggcctgactcaggattccttaggacattggat
tcaagtattaggcgtaacacagctgtcattaaaaaactgaagcagattaatgaagagcag
cgggaagggctgctggatgacttaagaagtgttaatcttagcaaatttgtcagtgaagct
gtgacttcaatttgtgatgccaaacttagaagttcagatatacaatcagcagttcagatc
tgctctttgcttcatcaaagatacaaagacttctccccaagcctcgttcaagggcttttg
aaagtcttctttcctggaaaatcaggggatgactcagatacagataggaatctgaaggct
atgaagaagcgcagtactctgaagctacttttggaactttactttgttggggttatagaa
gacagtgctatttttgtaagcatcatcaaagatcttaccagcatcgagcacttaaaggat
cgggatactactcagacaaatttatctctccttgctagttttgctcgacagggaagaata
tttcttggacttccactcactgggcaagaggtgtatgaagagttttttaaaggtcttaat
atcacagcagatcaaaagaaatttttcaggaaggtgttgcatgcatattatgaagctgca
tcagaacttcttcagactgagcatacttctcttcgtcaattggagcatgaaaatgcaaaa
attctcaatgccaagggagagctaagtgatgaaaatgtagctacatatgaaaaactgaga
aaatcttatgaccagttgtaccgcaatatctcttccttagcagaggcacttgatatgcag
cctccagtaatgccagaggatggtcacacaactagggttacttctggagaagatgcttca
tcgaattctgctggaaaggattcttctgttcttgaagccatatgggatgatgaagatact
aggtctttctatgaatgcttgccagatctcagagcatttgttcccgctgtattgttgggg
gaagcagaatccaagctgaatgagcaatctgtgaagacacaagagcaatccactgaactg
gcacctgaatcagaccaagttcaacaaactgcccaagacactggagagatttttacagat
tctggtgcttcacaggaggggagaagtgcagaaaaagggaaagaaaaggaagaaaaggat
aaggagaggagtaaagaccctgaaaaagagaaagggaaagaaaaagatgctgataagaaa
ggagacactgaaaaagagaaattaaaaagtattgaagggacaaatttagatgccttattg
cagaggcttccaggttgtgtgagccgtgatcttatagatcaattgactgtagaattttgt
tacttgaattcaaaagcaagtcgaaaaaagcttgtgagggcattgtttaatgttccaagg
acttcattggaactgctaccatactattcacgcatggttgccacattatcaacatgcatg
aaagatgtttcttccatgctcctacaaatgctagaagaggagtttaatttcttaattaat
aaaaaggatcaaatgaacattgaaacaaagattaggaacattaggtttattggagaacta
tgcaagtttaaaatcgcaccagctggtcttgtttttagttgtttgaaggcttgtttagat
gatttcagtcaccataacattgatgttgcttgcaatcttctggagacctgtggtcgtttt
ctgtatcggtcacctgaaactactgttcgaatggctaatatgttggagatattgatgcgt
ttaaaaaatgtcaaaaatttggatcctcggcatagcacccttgttgaaaatgcttactat
ttgtgcaaaccacctgagcgatctgcccggattgctaaagtccgtcctcctttgcatcag
tacataagaaaattgctattttcagatcttgacaaatctacaattgagcatgtgctgaga
cagcttcgtaaattaccatggaaggaatgtgaaccctatcttttaaaatgcttcatgaag
gttcacagagggaaatatggtcagattcatttgattgcttctctcactgctggcttaagt
cgctatcatgatgaatttgctgtagctgttgtagacgaggttttggaagagattcggctt
gggctagaattaaatgactatggtatgcagcagagacgcttagcccatatgcgatttttg
ggagagctatacaactatgagcatgtggattcatctgttatttttgagacgctgtatttg
attcttgtatttggccatggctcaccagagcaagatctactggacccaccggaggattgt
ttccgcatgaggatggttattactctccttgaaacctgtgggcactattttgatcgaggc
tcttctaaaaggaaactagatcgatttttaatacactttcaaagatatatcctgagcaaa
ggtgctttaccactagatattgaatttgacttgcaggatttatttgctgatttacgtccc
aatatgactcgatactcatctattgaagaagttagttcggctctggtggaacttgaggaa
catgaacgcagtctcccatctgacaaaacaagtagtgagaaacactctgacactgaaata
aggagtactttcaactctatttcaggaaatggacagagtgctgtgaatggtaacgaggga
aatggtgggttgcatgatgaccttggagacagtgacagtgattcaggaagcggcactctt
gatccagagggacatgatgaagaagaattggatgatgagaatcatgacgaagaatgtgat
agtgaggaggaggatgatgatgggggtggacctgcctcagatgaggatgaagtccatgtg
aggcagaaggtgatggaagttgaccctcatgaagcagcaagttttgagcaagaactaaag
gctgttatgcaggaaagcatggagcagcgcaggcaagaactacgtggtcggcctacatta
aatatgatgataccaatgaacgtgttcgagggatcagccagggggattggtggggaaagt
ggtgatgaagcattggatgatgagggtgggggaagtaaggacatccaggtaaaagttctt
gtgaagcgtgggaacaagcaacaaaccaagcagatgtacatccctcgtgattgctctctt
gtacagagcacaaaacaaaaagaagcagctgagcttgaggagaaacaagacatcaaaagg
ctcgttttagaatataatgatagagaggaggaggaactgaatgggttgggaacccaaact
ttgaaccatgtgcagggtggcagcagtagagtttccacccgaggtcacttgtgggaagga
ggcagtgggagggggggaacgcggcatcgccaatattccggtggtggaatcttttacaac
agaaaaaagtga
DBGET
integrated database retrieval system
