Humulus lupulus (common hop): 133800095
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Entry
133800095 CDS
T11341
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133800095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133800095
03041 Spliceosome [BR:
hlp03041
]
133800095
03009 Ribosome biogenesis [BR:
hlp03009
]
133800095
03016 Transfer RNA biogenesis [BR:
hlp03016
]
133800095
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133800095
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133800095
Spliceosome [BR:
hlp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133800095
Complex C
U4/U6.U5 tri-SnRNP related factors
133800095
Ribosome biogenesis [BR:
hlp03009
]
Eukaryotic type
Pre-60S particles
Helicases
133800095
Transfer RNA biogenesis [BR:
hlp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133800095
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
133800095
NCBI-ProteinID:
XP_062094055
LinkDB
All DBs
Position
1:166124207..166131648
Genome browser
AA seq
984 aa
AA seq
DB search
MEESSPTLGKRKDPEESEVTDSAKRRSLTRTCVHEVAVPSGYFSAKDESEHGTLANPVYN
GEMAKTYQFKLDPFQQVSVSCLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS
PLKALSNQKYRELSQEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWV
IFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNLHKQPCHVVYT
DFRPTPLQHYVFPVGGSGLYLVVDENEQFREDNFVKLQDTFSKQKDFGDSKGHRGSNGKP
SGRIAKGGPASGGSDIFKIVKMIMERKLQPVIIFSFSRRECEQHAMSMSKLDFNTQEEKD
TVEQVFRNAILCLNEEDRELPAIELMLPLLQRGIAVHHSGLLPVIKELVEILFQEGLVKA
LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRFIGSGEYIQMSGRAGRRGKDDRGICIIM
IDEQMEMNTLRDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEK
ALPDIGKRVSKLEEEVAILDASGEVAVSEYHKIKLDIAQLEKTMMSEIMRPERILFFLQP
GRLVGIREGGTDWGWGVVVNVIKKPSAVLGARGGGYIVDTLLHCSPGSSENSSRPKPCPP
RPGEKGEMHVVPVQLPLISALSRLRISIPPDLRPLEARQSILLAVQELGTRFPQGLPKLN
PVADMGIEDPEIVELVKQIEELEKKLYSHPLHKSQDVDQIKSFQRKAEVNHEIQQLKSKM
RDSQLKKFRDELKNRSRVLKKLGHVDADGIVQLKGRAACLIDTGDELLVTELMFNGTFND
LDHHQIAALASCFIPGDKSNEQIQLRTELAGPLQQLQDSARRIAEIQHECKLDVNIEEYV
ESTVRPYLMDVIYCWSKGASFSDVIQMTDIFEGSIIRSARRLDEFLNQLRGAAQAVGEVD
LENKFGAASESLRRGIMFANSLYL
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggaggaatcttcgccaaccctagggaaacggaaggaccccgaagagtcagaagtcacc
gactccgcaaagcggcgaagcctgacgcgaacctgcgttcatgaagttgcagttcccagt
ggctacttctcggccaaggacgagtccgagcatggaaccctagccaatcctgtctacaat
ggagaaatggccaagacctaccaatttaaactcgatccgtttcagcaagtctctgtgtct
tgcttggaacgaaacgagtcggtcttggtctcggcccacacttcggctggtaagaccgcg
gtggccgagtacgccattgccatggctttcagagataaacagagggttatctacacttcg
ccattgaaggccttgagtaatcaaaagtacagagagctcagccaagagtttcaagacgtt
ggtttaatgactggtgacgtcactctttcgccaaacgctagctgtttggttatgacgact
gagattctcaggggaatgctttatagaggttcagaggttctgaaagaagttgcttgggtt
atatttgatgaaattcattacatgaaggatcgtgaaagaggggttgtttgggaagagagc
ataatattcttgccgccggccattaaaatggtttttctctcggcgacaatgtcaaatgcc
accgagttcgctgagtggatctgtaatttgcataaacagccttgtcatgtcgtttacaca
gattttcgaccgacccctttgcagcattatgttttcccagttggtgggagtgggttatat
cttgtggttgatgagaatgaacagtttagagaagacaattttgtgaagctgcaagataca
ttctcaaaacagaaagattttggtgattctaaaggtcacagaggctctaatggcaagcca
agtgggagaatagcaaaaggtggacctgcttctgggggttcggacattttcaaaatcgtc
aagatgattatggaaagaaagttgcagccggttattattttcagcttcagtagaagagag
tgtgaacaacatgccatgtcaatgtccaagcttgattttaacacacaagaggaaaaagat
actgttgagcaagtgtttcgtaatgccatactctgcttgaatgaagaagacagagaatta
cctgcaatcgagttaatgttaccactacttcagcgaggcattgctgttcatcattctggt
cttcttccagttattaaggagttggtagagattcttttccaagaaggccttgtaaaggca
ctttttgctacagagacgtttgctatgggtttgaatatgccagcaaaaacagttgtgttt
actgcagttaagaagtgggatggtgatagccatcgtttcattggatcaggtgagtatatt
cagatgagtggacgggctgggcgtcgtggcaaagatgaccgcggcatttgtataataatg
atagatgagcagatggagatgaatacactaagggacatggttttaggtaaaccagctcct
ttggtgagtaccttcagattgagctactactccattttaaatttgatgagccgtgccgaa
ggccagttcaccgccgagcatgtgataaagaattcattccaccaatttcagtatgagaag
gctttacctgatataggcaaaagggtttcaaagcttgaggaggaagttgcaatacttgat
gcatcaggagaggttgctgtttctgaatatcataagattaaacttgatatagcccaactt
gagaaaacgatgatgtcagaaataatgaggcctgaaagaattttgttttttcttcaacct
ggtcgattggtcggaattagggaaggtggaacagactggggttggggtgttgtagttaat
gttattaagaagccctcagcagtattaggtgcacgtgggggtggttacattgtggatacc
ttactacactgttcacctggttcaagtgagaacagttcacgacccaaaccatgtccacct
cgtccaggagagaagggtgaaatgcatgtggttccagttcaattacccttaatttctgct
ctcagcagactaaggatatctattcctccagatctgcgaccattagaagcaaggcaaagc
attctgcttgcagtacaggagctgggaactcgttttccccaaggtcttcctaagttgaat
cctgtagcggacatgggcattgaagatcctgagattgttgagttggtaaaacaaattgag
gagctcgaaaaaaagctatattctcatccgctccataagtctcaagatgtagaccaaatt
aaatcatttcagaggaaagcggaggtgaatcatgaaattcaacagctgaagtcgaagatg
cgtgattctcaacttaaaaaatttcgagacgagcttaagaatcgatcacgagttttgaaa
aaacttggccatgttgatgctgatggtattgttcagctaaaggggcgagcagcctgcttg
attgacacgggagatgaactacttgttactgaattgatgttcaatggtacattcaatgat
cttgatcatcaccaaattgctgctcttgcaagttgttttattccaggagataagtcaaat
gagcagatacagttgaggacagaacttgcagggccattacaacaactccaagacagtgcg
agaaggatagcagagatacaacatgaatgcaaattagatgtaaacattgaagagtacgtg
gaatcaactgttaggccatacttgatggatgtaatatactgctggtcaaagggtgcaagt
ttttcagatgtcatacagatgaccgatatctttgagggcagtatcattcgaagtgccagg
aggcttgacgagtttttgaaccagttacgtggggcagctcaagccgtgggagaagttgat
ttagagaataaatttggtgcagcaagtgagagccttcgccggggtataatgtttgcaaac
tcactttatctttaa
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