Humulus lupulus (common hop): 133801071
Help
Entry
133801071 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133801071 isoform X1
KO
K06100
symplekin
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133801071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlp03021
]
133801071
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133801071
Transcription machinery [BR:
hlp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133801071
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133801071
U7-dependent histone pre-mRNA processing factors
133801071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
133801071
NCBI-ProteinID:
XP_062095188
LinkDB
All DBs
Position
9:complement(170386174..170397550)
Genome browser
AA seq
1361 aa
AA seq
DB search
MVGMVMVAANSMEKLSGLVDSAKLATDIPSKLDRLRQLKNDLVEDDLDLLSHLLPRIFEL
HSDRFSPVRKFAIQIIGGIGVKHVDFLPEIVPVLITVLNDSTPAVARQAVSCGIDLFRRT
LEKVAIQGLYSSELDDSLESAWEWMLKLKEKIFSIALRHGGGGIRLLALKFVEAVILLYT
PDPNGSLEPPSDEENLMEFNISWLRGGHPLLNVGDLSIEASQTLGLLLDKLRFPSGIPLS
NSTLIVLINSLSTIANKRPAFYGRILPVLLGLKPTSSVVNGVHIFGVHHALKNAFLACLK
CTYPGAAPWRDRLAGALREMKAGGPAEPVFHHVSEINGGLGAELEDTFLAKEEKPTVEAY
GPVHNNLGKKRSGAQGKGNCAKDEDASGKRIRVTPIASAESAKELEKNNYGVQDDISSTG
PTTSKGDSDTGPVHQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVIVNMRNLPPS
HSIDEVDDEPLLNMSIIGSDSQVKYPPSFVANVLSLSSTFPPIASLLDTHQAISDDTMNP
EGEEECLADNAVVDGAESLFSTGLSASDVSSELGKGCLAISSDINDLGNLESEIPGLDSA
ARNDGSFGQLAASSSVSTDLEDASLDQITSSSQISPLNVLPSVSTDRSEELSPKAIVSDV
NSLVSSTATSVGLSHHFVLPKMSAPVISLADDEKDDLQKSALIRVVEAYKQLSVAGDLQI
RSSLLASLGIELPSELEPWKMIQKHILADYVNHEGHELTLRVLYRLFGEAEEDRDFVSST
TATSVYEMFLFTVVETLRDSFPPSDKSLSRLLGDVPYLPNTVLKLLECLCSPEILDKTEK
EIQSGDRVTQGLSTVWSLILLRPPFRDACLKIALKSAVHHLEEVRMKAIRLVANKLYPLS
SVAQSIEDFAREMLLSVINSDSSDKLGAEGPITERTKDPDSERSLNELQSMSTNSKDVPS
DTHQSSTSPGASSFMVSEAQRCMSLYFALCTKKHSLFGQIFVVYRNASAAVKQAVDRHIP
ILVRTMGPSLALLEIISDPPIGSENLLLQVLHTLTDGAVPSQELINTIKKLYNSKLKDIE
ILIPILPFLSKDEVLLNFSQVVKLPPEKFQAALIRILQGSPHSGPLLAPAEVLIAIHGID
PDRDGIPLKKVTDACNACFEQRQTFTQQVLAKVLNQLVEQIPLPVLFMRTVLQAIGAFPA
LVDFVMEILSRLVSKQIWKYPKLWVGFLKCAFLTKPQSFGVLLQLPPPQLENALNRTPAL
RAPLVAHASQMDIRSSLPRSILVVLGIVSDTQTSAQAQTSQSQAQTSQSLAQTSQSQAQT
SQSQAQTSHSQAQTSQSQAAETSTADKESIKEKSKESSSVS
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatggtgatggtagcagcgaactccatggaaaaactttccggtcttgtggac
tcggccaagttggccactgacattccatcgaagctcgatcgcctccgccaattgaagaat
gacttggttgaagatgaccttgatttgctctctcatctccttcctcgtattttcgagctt
cattctgataggttcagtccggttcgcaaattcgctattcaaataattggtggaattgga
gtgaagcatgtcgatttcttacctgaaatcgttcctgtattgataactgttctcaatgat
tctacaccagctgttgctcgacaagcagtttcttgtggaattgatttgtttcgtcgaact
cttgaaaaagttgcaattcagggtctatattctagtgaattggatgattcactagagtcg
gcatgggagtggatgttaaagctcaaagagaaaatattttcaattgctttacggcatggt
ggtgggggtataagattgctagcattgaagtttgtggaggcagtcattcttctttacaca
cctgatcctaatggctctttagagcctccttctgatgaagaaaatctaatggaatttaat
atatcttggcttcgtggtggtcatcctctactcaatgttggggatctgtcaattgaggcc
agtcaaactttgggattattgcttgataaactcaggttcccttctgggattcctctcagt
aactcgacacttattgtgcttattaatagcctttcaacaattgcaaataagaggcctgca
ttctatggacgaatccttccagttttacttggtttgaagcctacaagctctgttgttaat
ggagtgcatatttttggggtacatcatgctttgaaaaatgcattcctcgcctgcttaaag
tgtacatacccgggtgctgcaccgtggcgtgatcgtttagcaggggccctgagggagatg
aaagctggaggaccagcggagcctgtctttcaccatgtttctgagattaatggaggtttg
ggagctgagctagaagatactttccttgcaaaggaagagaaacctactgttgaagcatat
ggtcccgtgcacaacaatcttggaaagaaaagatctggagcacagggtaaaggtaattgt
gctaaggatgaagatgcatcagggaaacgaatccgagtaacacctattgcctcagctgaa
tcagctaaagagttagaaaagaataattatggtgttcaggatgacatttcttcaactgga
ccaaccacttccaaaggagacagtgatactggtcctgtgcatcaacttgttgccatgttt
ggtgccttggttgctcaaggggaaaaagctgtaggttctttagagatactcatttcaagt
atctctgctgatctgctggctgaggtagtgatagtcaatatgcgcaaccttcctccaagt
cattctatagatgaagtggatgatgaaccattgctgaacatgagtataattggcagcgat
tctcaagttaaatatccaccatcatttgttgctaatgttctttcactttctagtactttc
cccccaatagcttcactgctggatactcaccaggcaatatccgatgatacgatgaatcct
gaaggggaggaagaatgtttagctgataatgctgttgttgatggtgctgaatcattgttt
tctactgggttatctgcttctgatgtttcttctgaattgggcaaaggttgcctagcaatt
tcatctgatattaatgatttggggaatttagagagtgaaatacctggattggattctgct
gctcgtaatgacggttcgttcggacagttagctgcttcgtcgtcggtctccaccgactta
gaagatgccagtttagatcaaatcactagctccagtcaaatatcgccgttgaatgttctt
ccatctgtgtcaacagataggtctgaagagctaagcccaaaagcgattgtttcagatgtc
aacagcctggtttcttcaacagcaacttcagttgggttgtctcatcattttgtcttgcca
aaaatgtcagctcctgtcatcagccttgctgatgacgagaaagatgatctgcagaaatca
gccctcattcgtgttgttgaggcttataagcaattatcagttgcgggagatttacaaatt
cgatcttctttgcttgcaagcttgggaatcgagcttccctctgagttagaaccctggaag
atgatacagaagcatattttggcggattatgtaaatcatgagggacacgagttgacactg
cgtgtcctgtacaggttatttggtgaagcagaagaggaccgtgactttgtttcgtctaca
actgctacttctgtatacgaaatgttcctttttactgtggtggaaacacttagagattca
tttccaccctcggacaaatcattaagcagattgcttggtgatgttccatatctaccaaat
acagttttaaagttattggagtgcttgtgttcgcctgaaatcttggacaagactgaaaaa
gaaattcaaagtggggatcgagtgacacaaggcttgagcacagtatggagcctgatttta
ttaaggcccccgttcagagatgcctgcttgaaaattgctctaaagagtgcagttcatcat
ctggaggaagtgcggatgaaggctattagactggtagccaacaagctttatcctttgtca
tccgttgctcaaagcatagaagattttgcgagagaaatgctgctttctgtaataaatagt
gattcctcagacaaattgggtgctgaaggaccaattactgaacgcacaaaggatcctgat
tcagaaaggtctttaaatgaacttcaatcaatgagtaccaacagtaaagatgtgccctct
gacactcatcaatcctccacttccccaggtgcttcatcctttatggtctctgaagcccaa
cgatgtatgtcactatattttgctctgtgtacaaagaaacattccctctttgggcaaatt
tttgttgtttatagaaatgcatccgcagcagttaagcaggcagttgatcggcatatccca
atactagtccgcactatgggcccatcgctagctcttcttgaaattatttcggatcctccc
attggaagcgagaaccttctattgcaggttttgcatacactgacagatggagcagttcct
tctcaagaactgataaataccattaagaagctatataattcaaaattaaaggatatagag
attcttattccaatattaccctttctttctaaagatgaggttttgctgaacttttcccaa
gttgtgaaacttccaccagaaaagttccaagcagctcttattcgcatactacagggttca
ccacattctggtccactgcttgctcctgctgaggtcttaattgctatccatgggatagat
cctgatagagatggaattcctctgaagaaggtcacagatgcttgcaacgcttgtttcgag
cagcgacaaacattcacccaacaagttcttgctaaagtgttgaatcaattggttgagcag
attcctcttcctgtcttgttcatgcgcacagtgttacaagccataggtgcttttcctgca
ctggtggattttgttatggagatcctctctcgacttgtaagcaaacagatttggaaatac
cccaagctgtgggtgggcttcttgaagtgtgcattcttgaccaaacctcagtcattcggt
gttttgcttcagctacccccaccacaacttgaaaatgcattgaatcggacccctgctttg
agagccccactggttgcacatgctagccaaatggatattcgatcttcacttccaaggtct
atattggtagtgttgggcattgtttctgatactcagacttcagcacaggcacaaacaagt
cagtcacaggcacaaacaagtcagtcactggctcaaactagtcagtcacaggcacaaaca
agtcagtcacaggctcaaacaagtcattcacaagcccaaactagtcagtcacaggctgca
gaaacgagcactgcagataaggagagtatcaaagagaaatctaaagaatcatctagtgtt
tcttaa
DBGET
integrated database retrieval system
