Humulus lupulus (common hop): 133802177
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Entry
133802177 CDS
T11341
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133802177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlp03021
]
133802177
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133802177
Transcription machinery [BR:
hlp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133802177
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133802177
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
133802177
NCBI-ProteinID:
XP_062096432
LinkDB
All DBs
Position
9:20428967..20436060
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AA seq
710 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAGGLPNPTGAAGPIVQSDSASATAVAINPVGQGPVVSVDHSGP
GANHNKRGSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRMYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEILQKIQHLSSYGYNNKFFQHR
NTGFSQQAEKSQNAQGSNIINQGLVGKPSTIESSNIQQQPQQQVQSSNQPIGQNQIQNVP
NGLPNQTNKNASPLPPGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAEN
VILIFSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGRNFAVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKG
VNPDNGGENPDIVPFEDNEEEEEEESDDEEESFGQVPGAANQGRGRGRGVMWPPHMPLAR
GARPMPGMQGFPPVMMGADGSPYGPVTPDGFPMPDLFGGPRAFNPYGPRFSGDFMGPGSN
MMFRGRPTQPGGVFPGGGFGMMMGPGRGPFMGGMGVQGGNPGRAVRPGGMPPQQMFPPPP
PQSSQNANRGPRRDLRGPANDRNDRYIVAGSDQIRGGQEMSGPAGGQDDEAHYQQGGGKT
PHQEDQYGAGNSFRNDDSESEDEAPRRSRHGEGKKKRRGSEGDTNTGSDL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggagggggttctcagcttcgacttcgagggaggtctagacgccggaggg
ttacccaaccctactggagcggccggaccaattgttcagtcagattcggcttccgccacc
gcagtcgccatcaacccggtcggacagggccctgtggtctcagtggatcactcgggtcct
ggcgcaaatcataataagcgggggagctttcggcagacggtatgccggcactggcttcgt
agtctgtgtatgaagggagaagcttgtgggttccttcaccagtacgacaagtcccggatg
cccgtttgtcgtttctttcgaatgtacggtgagtgccgcgagcaggactgtgtttacaaa
cacactaacgaagatatcaaggagtgtaacatgtacaaattaggcttttgtccaaatggt
ccagattgccgctatagacatgcgaagcttcctggacctccaccccctgtggaagaaatc
cttcagaagattcagcatttgagttcttatggctacaacaataagttttttcagcatcga
aatactggtttttcccaacaagcagaaaaatcacaaaatgcacaaggctccaatataatc
aaccagggcttggttggaaaaccttctacaatagagtcttctaatatccagcagcaaccg
cagcaacaggttcaatcgtccaaccaaccaattggtcagaaccagatacaaaatgttccc
aacggcttgcctaatcagacaaacaaaaatgcgtcacctctgcctccaggaatatctagg
tattttattgttaaaagttgcaaccgtgaaaatctggaattatctgtgcaacaaggagta
tgggcaactcagagaagcaatgaagctaaacttaatgaagcttttgactctgctgaaaat
gttatcttaattttctctgtcaatcggactcggcatttccagggttgtgcaaagatgatg
tccagaattggtgggtctgtcagcggtggaaattggaagtatgcacatggaactgcacat
tatggacggaactttgcagtcaaatggttgaagttatgtgaactatccttccacaagact
cgccatttaaggaatccatacaatgagaacttaccggttaagataagtagagattgccaa
gagttagagccctccattggtgagcagttagcttcgctgctttatcttgaacctgatagt
gaacttatggcaatttcagtcgcggcagaatcaaaacgagaagaggaaaaagctaaggga
gtcaatccagacaatggaggagagaatccggatattgttccatttgaggacaatgaagaa
gaggaagaagaggaaagtgatgatgaggaagagagctttggccaggttcctggggcagct
aatcaaggtagaggaagaggcagaggagtcatgtggcctcctcacatgccactagctcgt
ggcgctagacctatgcctggcatgcaaggttttcccccagttatgatgggtgctgatggg
tcaccatatggacctgttacacctgatggatttcccatgccagatctttttggaggccct
cgtgcttttaatccatatggtccaaggttttctggtgattttatgggaccaggatccaac
atgatgtttagggggcgacccacacaacctgggggtgtgtttcctggtggtggctttggg
atgatgatgggtcctgggcgtggtccatttatgggaggtatgggagttcaaggtggaaat
ccaggccgagctgttcgtccaggtggtatgcccccgcagcagatgtttccaccacccccg
ccacaatcctcacaaaacgctaaccgtggtccaagaagagatctgaggggaccagccaat
gatcgaaatgacagatatattgttgcagggtcagaccaaatcagggggggtcaagagatg
tctggtccagccggcggacaagacgatgaggctcactatcaacaaggaggaggtaagact
cctcaccaagaagatcagtatggtgctggaaacagcttcagaaatgatgatagtgaaagt
gaggatgaggccccaagacgatcgagacatggagagggaaagaagaagcgccgaggctct
gaaggagacactaacactggatcagatctctaa
DBGET
integrated database retrieval system
