Humulus lupulus (common hop): 133802382
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Entry
133802382 CDS
T11341
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133802382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133802382
Spliceosome [BR:
hlp03041
]
Complex B
Other components
Prp19-related factors
133802382
Complex C
133802382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_occluded
RRM_YTH1
zf-CCCH_4
RRM_3
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
133802382
NCBI-ProteinID:
XP_062096665
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All DBs
Position
9:11269976..11273735
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AA seq
496 aa
AA seq
DB search
MAHRLLRDVEADGWERSDFPIICESCLGDNPYVRMTKANYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKVKNVCQVCLLDLEYGLPVQVRDTALSINSNEAIPKSDVNREFFAE
EHDRKARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAQKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVT
EQDLRDNFYAHGEIESVRMVLQRACAFVAYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKPESDVSDEARQQAAVAHSGLLPRAVISQQQFQSQDQSAPMYYNIPPPSQPERNFY
PSMDPQRMGAIVSSQEGASSGSSGSGENKSQDKQQQQGQHFAYHPRPPQHGQYHQQYYPP
YGGYMHPPPPPGPPPPYQQYPAPHHSAMPPRQPPPPVNQQQYQHPAASASAPAGSVASGS
NPPGSSGSAAPTSSSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaggttgcttcgagacgtagaggccgacggttgggaaagatcggacttcccc
ataatctgcgagtcatgtcttggtgacaatccttacgttcggatgacaaaagcaaattat
gacaaggagtgcaagatttgtacacgaccattcacagttttcagatggagaccaggtcgg
gatgcaagatttaagaaatcagaaatttgccagacttgcagtaaagtgaaaaacgtttgt
caagtttgccttttggatttggaatatggtttaccagtccaagttcgagatactgcactt
tctattaattcaaatgaggccattcccaagagtgatgtaaatagagagtttttcgctgaa
gaacatgataggaaggctagagctggtttggattatgaatcttcttatggaaaggtgcgg
ccaaatgacaccattttgaagcttcaaagaacaacaccttattacaagaggaatcgagcc
catgtttgcagtttctatattcgtggtgaatgcactaggggtgctgagtgtccttacagg
catgagatgccgataactggggagttgtcgcaacaaaatataaaagatcgatactatgga
gtcaatgatcctgtagcccagaagcttctcaacaaggcaggagagatgccgtctttggaa
ccaccggaggatgagagcatcagaacgctttatgtgggtgggcttgatgcaagagttact
gagcaggatttaagagataacttttatgctcatggggagattgaatccgttcggatggta
ctacagcgagcatgtgcctttgtggcctacacaactagagaaggtgcagagaaggctgca
gaagagctctcaaacaaactcgtaattaagggtttgaggttgaagcttatgtggggtagg
ccacaagcacccaaaccagagagtgatgtctctgatgaagcgagacagcaggcagcagta
gctcacagtgggttattacctcgagctgtcatatctcaacagcaatttcaatctcaagac
caatctgcaccaatgtactacaacatccctcccccttctcagccagagagaaacttttat
ccgtcaatggatcctcagagaatgggtgctattgtttcctctcaagagggtgcttctagt
ggatcctcagggtcaggtgagaacaaatcacaagacaagcagcagcagcaggggcagcat
tttgcttaccatcctaggcctccacaacatggccaatatcatcaacagtattatccacca
tacggtgggtatatgcatccgccaccaccaccaggtccaccaccaccttatcagcagtac
cctgcaccacatcattccgcaatgccaccacgacaaccccctcctccagtaaaccagcag
cagtatcagcatcctgctgcttcagcctctgctccggcaggatctgtagcatcgggttcc
aaccctccagggtcatctggatctgctgcccctacatcatcatcatcttag
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