Humulus lupulus (common hop): 133803329
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Entry
133803329 CDS
T11341
Name
(RefSeq) THO complex subunit 5B
KO
K13174
THO complex subunit 5
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03013
Nucleocytoplasmic transport
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133803329
09122 Translation
03013 Nucleocytoplasmic transport
133803329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133803329
03041 Spliceosome [BR:
hlp03041
]
133803329
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133803329
Spliceosome [BR:
hlp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133803329
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
133803329
NCBI-ProteinID:
XP_062097312
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All DBs
Position
X:complement(141719838..141722289)
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AA seq
483 aa
AA seq
DB search
MEDGEVEEGMLVEEDVHTEADCKVEKSPCELLQKSKRSVEDIVAKMLSIKKEGNPKSELK
ELVTQMFIHFVTLRQANRSILLQEDRVKAETENAKAPVDFTTLQLHNLMYEKGHYIKAIK
ACKNFKSKYPNIELVPEEEFFRDAPEEIQNSVLSNDPAHNLMLKRLDFEHLQRKVLCTLR
EKLEHQKKSLSEIIANRQNFLSSLPSHLKSLKKASLPVQNQLGVLHTKKLKQHHSAELIP
PPLYVLYSQFLAQKEAFGEQIDLEILGSVKDAQTLTHQQANVDTGISTNLESSRMEDGAA
DEEEDGQRRSKRTRRIPAKDNLEQAGYQVHPLKVVLHVYDDDVSDPKSAKLITIKFEYLL
KLNIVCVGIEGSHEGPENNILCNLFPDDTGLELPHQSAKLLVGDSLVFDENRTSRPYKWA
QHLAGIDLLPELSPLLTRHGTPSSDVAKSDAVISDLSIYRQQNHVLTVVQRIRSRKKGQL
ALV
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggaagatggcgaggtcgaggaggggatgctggtcgaagaagatgtgcacacagaggct
gattgcaaagtggaaaagtcgccatgtgaattgcttcaaaagagcaagcgttcggttgag
gacatcgttgccaaaatgctttccattaagaaagagggaaaccccaaatccgagctcaaa
gaactagtcactcagatgttcatacactttgtcacacttcgccaggcaaatcgttctatc
ttgctccaagaggatcgtgtgaaagcggagacagaaaatgccaaggccccagtggatttc
acaaccctgcagcttcacaatctaatgtacgaaaagggtcactatattaaagccataaaa
gcttgcaaaaatttcaaatcaaaataccctaacattgagctcgtacctgaggaggagttt
tttcgtgatgcaccagaagagatacaaaattctgtattgtcaaatgatcctgcacacaat
ctcatgttgaagaggctcgatttcgaacatcttcagcgcaaagtgctatgcacacttcgc
gaaaaacttgaacatcagaagaaaagtctttcagagattattgcgaatcgccaaaatttc
ttgtctagtctcccatcacacctcaaatctcttaagaaagcttcgttgccagtacaaaac
caattaggggtgctgcatacaaagaaactgaagcagcaccactcggcagagttgattcca
cctcctctctatgtgctttactcacagttcttggcccagaaagaagcattcggtgaacaa
attgatctggagatacttggaagcgtgaaggatgcacaaactttaactcaccaacaagct
aatgtagacactggaatttctactaatctggagagttccagaatggaggatggagcagct
gatgaggaagaagatggccagagaaggagtaaacggacgaggaggattccagccaaggac
aacctggaacaggcaggatatcaagttcaccccctaaaagtggtgcttcatgtatatgat
gatgacgtctctgatcccaagtctgcaaaacttatcaccattaagtttgagtatttgttg
aagttgaacattgtatgtgttggaatagaaggatcccatgaaggacctgagaataacatt
ttgtgcaacttattccctgatgacaccggccttgagcttccacaccagtcagccaagctt
cttgttggtgattctcttgtatttgatgaaaatagaacttctcgtccatataaatgggcc
cagcacttagcaggaattgatttattgcctgagctatcacctttgcttactcgacatgga
actccaagcagtgatgttgcaaaaagtgatgcagtcatatctgacctttctatataccgc
cagcagaatcatgtgttgactgtagttcaaagaattcgatctcggaaaaagggtcaactg
gcccttgtgtga
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