Humulus lupulus (common hop): 133803373
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Entry
133803373 CDS
T11341
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133803373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlp03021
]
133803373
03036 Chromosome and associated proteins [BR:
hlp03036
]
133803373
Transcription machinery [BR:
hlp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133803373
Coactivators
SAGA/TFTC/STAGA complex
133803373
Chromosome and associated proteins [BR:
hlp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133803373
STAGA complex
133803373
TFTC complex
133803373
SAGA complex
133803373
SLIK complex
133803373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_VPS8
Ge1_WD40
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
PALB2_WD40
Dimer_MINDY4_N
Cytochrom_D1
LisH
Tricorn_2nd
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
133803373
NCBI-ProteinID:
XP_062097371
LinkDB
All DBs
Position
X:188200751..188208013
Genome browser
AA seq
687 aa
AA seq
DB search
MDEENILKFVTAYLKKKGFKQTEHAFQEELHHNKTTHNSSSLISSTSQFDADIAKQLLSF
FESEIGPVQYQDGYSKLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVANGHIQEARAFF
NSFHEDHEMMHLCDLPKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQFLHKS
QSTTVLGIINEHINFQVSPGQPNLISDDAEAVTLTGSSQDAVSQINQKEIHWGLLEDSLE
ERLEKTGGLLSDSEKAEGETKESEWEENKKRSAEGGKQGSSVKKLKKDKATGATGKATRP
KTNIVTMAPRVKPELPLPTISVEVEQSILDDLRNCVQLSSVALPSVSFYTFINAHNGLNC
STISPDGSLVAAGFSDSSLKGDDDANPNEFGSNGGKRPYTLFQGHSGPVYSASFSPMGDC
ILSSSADSTIRLWSTELNANLVCYKGHNYPVWDYSPVGHYFASASHDRTARMWSMERIQP
LPIMAGHLFDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIFIGHRSMVLSLAMSS
DGRYMASGDEDGAIMMWDLSSGRCVAPLMGHTSCVWTLAFSGEGSVLASGSADCTVKLWD
VSTSTKVSKTEENISGNTSRLRSLKTLPTKSTPIYIVCCFLGEIFYSELGSFPKLYEIIF
FHLFLALVQSPGLVSVQICCIIISFSS
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagaacatactgaaattcgtgacagcatacctgaagaagaaaggtttcaag
caaaccgagcatgctttccaggaagaacttcaccataataagaccactcacaattcctct
tctctgatttcttctacttcccaattcgatgccgatatcgccaagcagcttctctccttt
ttcgaatcggagattggtccagtacaatatcaggatgggtacagcaagttgaggtcatgg
acatatagctccctagatttgtacaggcacgagttgcttcgcgttctatatccggtgttt
atccattgctttatggatctagttgcaaatggtcatatccaagaagctcgggcattcttc
aatagctttcatgaagaccacgaaatgatgcacttatgcgaccttccgaaattggaagga
gttctctctccatctcatttggaggagatggaatttgctcactctcttagacaaagcaaa
gtcaatataaagatttgtcagtattcctatgagcttcttctgcaatttctgcataagtct
caatctaccactgtacttggtattatcaatgagcatatcaactttcaagtttctcctgga
cagcccaacttaatttctgatgatgcggaggctgttacattgactggcagcagccaggat
gcagtcagtcagattaatcagaaggaaatacattgggggttgctggaagactctttggaa
gaacgcttggaaaagactgggggtttgctttctgattctgaaaaggcagaaggagaaact
aaagagtcggagtgggaggaaaataagaaaagatcagcagaaggaggaaagcagggctca
tcagttaaaaagctgaaaaaagacaaggcaacgggagcaacagggaaagccactcgtcct
aagacaaacattgtaactatggcaccaagagtcaaaccagagcttcctttgcctacaatt
tcagtagaggttgagcagtctatacttgatgacttgagaaactgtgtacagctgagcagt
gttgctctgccatccgttagtttttatacatttatcaatgcacataatggtttaaactgt
tcaactatatcccctgacgggtcattggttgctgctggattttcagattcatcgctgaag
ggtgacgatgatgcaaatccaaatgagtttggttcaaatggaggaaaaagaccctatacc
ttatttcaggggcactcaggaccagtttattcagcttcttttagtcctatgggagattgt
atactttcctcttcagccgattcaacaattcggttatggagcactgaactaaatgcaaat
cttgtttgctacaagggtcataattacccagtatgggattatagtcctgtaggacactat
ttcgctagtgcatcacacgaccggacagcaaggatgtggtctatggaaagaatacaacct
ttgccaataatggcagggcatttatttgatgttgattgtgtgcaatggcatgccaactgc
aactacattgccactggttctagcgacaaaacagttcgactgtgggatgtccagagtggg
gaatgtgtcagaatattcattggtcacaggagcatggtcttgtctttggcaatgtcatct
gatggtcgttatatggcttctggtgatgaagatggtgcaataatgatgtgggatctttca
agtggccgatgtgttgcgcctttgatgggtcacacttcgtgtgtgtggactcttgctttc
agtggtgaaggttcggttcttgcatctgggtcagctgattgcactgtgaaactatgggat
gtatcaacaagcacaaaagtctcaaagactgaggagaacataagcgggaatacaagtaga
cttcgatcgctgaaaactctaccaacaaaatctacccccatctatatagtttgctgtttt
ctcggagaaatcttttattcggagctggggtcctttccaaagttgtatgagataattttt
tttcatctctttttagctttggtgcaatcaccaggtctagttagcgtacaaatttgttgt
attattatttcattttctagttaa
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