Humulus lupulus (common hop): 133803400
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Entry
133803400 CDS
T11341
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133803400
09123 Folding, sorting and degradation
03018 RNA degradation
133803400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133803400
03041 Spliceosome [BR:
hlp03041
]
133803400
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133803400
mRNA cycle factors
Stress granule specific factors
133803400
Spliceosome [BR:
hlp03041
]
Complex C
Other components
Complex C specific factors
133803400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
RRM_RdRP1_2
RRM_MARF1
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
133803400
NCBI-ProteinID:
XP_062097417
LinkDB
All DBs
Position
X:137142076..137147021
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AA seq
650 aa
AA seq
DB search
MAQIQVQNQASAVGPNGVPAGAGGANQFVATSLYVGDLEQSVTDSQLYDLFNQLGQVLSV
RVCRDLATRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGTGN
IFIKNLDKDIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEESAQSAIDKLN
GMLLNDKQVFVGPFLRKQERDSVSSKVRFNNIYVKNLSESTSDEDLSNFFGEFGTITSAV
VMRDGDGKSKCFGFVNFENADDAANAVEALNGKKIDDKEWYVGKAQKKYERALELKGRFE
QTMKEVNDKNHGVNLYVKNLDDSIDDEKLQELFLEFGSITSCKVMRDPNGVSRGSGFVAF
STPEEASRALAEMNGKMIVNKPLYVALAQRKEERRARLQVQFSQMRPVAMTTSVAPRMPM
YPPGAPGLGQQFLYGQAPPSIMPPQAGFGYQQQLVPGMRPGGGPMPNFFVPMVQQGQQGQ
RPAGRRGAGPVQHSQQPVPLMQQHMLPRGRVYRYPPGRNVQDVPIPGVAGGMLPVSYDMG
GMPMRDAGQPMPITALATALANSTPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQ
TEVLHLLESPDALKAKVAEAMEVLRTVAQQQANCPADQLASLSLNDNLVS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaattcaggttcagaatcaggcttctgcggtgggtcctaatggtgttccggct
ggcgctggtggtgctaaccagtttgtggcgacgtctctctatgttggagatctggagcag
agcgtcaccgactcgcagctttacgatctgttcaaccagctgggtcaagtcctgtcggtt
agggtttgtagggacttggctacacgccgatctcttggttatggttatgtcaactatagc
aacccccaggatgccgcaagggcattggatgtattgaacttcactccattaaataacaag
cctataaggattatgtattctcatcgggaccctagtattagaaagagtgggaccggaaat
atatttatcaagaatttggataaggacattgaccacaaagcattacacgatactttttcc
tcttttggcaatattctttcttgcaaagtagccacggatgcatctgggcagtccaaaggc
tatgggtttgtacaatttgatagtgaggaatcagctcagagtgcaatagataagttgaat
ggaatgttgcttaatgataaacaagtgtttgtagggccttttcttcgtaagcaagagaga
gatagtgtttcaagtaaggtgaggttcaacaatatatatgtgaaaaacctatcagaatct
acgtcagatgaagatttgtcgaatttttttggtgaatttgggacaattactagtgctgtt
gtcatgagagatggagatggaaaatcaaagtgctttggttttgtaaactttgagaatgca
gatgatgctgctaatgctgttgaggcattgaatgggaagaaaattgatgacaaggagtgg
tatgtaggaaaagctcagaaaaaatatgagagagcccttgaactgaaaggacgatttgag
caaactatgaaggaagttaatgacaaaaatcatggtgtcaatttgtatgtcaagaacttg
gatgatagtattgatgacgaaaaactccaggaactattcttggagtttggttcaattact
tcatgcaaggttatgcgtgaccctaacggagttagtagaggttctggttttgttgcattc
tctacccctgaagaagcatctcgagctcttgcagagatgaatggtaaaatgatcgtcaat
aaacccctttatgttgcacttgcccagcggaaagaagagagaagagcaaggttgcaggtt
cagttttcacaaatgaggccagttgcaatgactacttcagtagctcctcgtatgcccatg
tacccacctggtgctccaggtcttggccaacaatttttatatgggcaagcacccccatct
ataatgcctccacaagctggatttggttatcagcagcaacttgtgcctggtatgcggcct
ggtgggggtccaatgccaaacttctttgttccaatggtgcagcaaggtcagcagggtcag
cgtccagctggtcgacgtggtgcagggcctgtccaacattcccagcaacctgtgccatta
atgcagcagcatatgcttccacggggacgtgtatatcgttatccaccaggtcgcaatgta
caagacgttccaattcctggtgttgcaggtggaatgcttcctgtatcatatgacatgggt
ggcatgccaatgcgagatgcaggacagccaatgccaatcacggctttggctacagccctg
gcaaattctacacctgaacagcaaaggacgatgctgggagaagctttgtatcccttagtg
gatcagttggagcatgactcggccgctaaggtaacaggcatgcttctggagatggaccag
actgaggttttgcatctgcttgagtcaccagatgctttaaaggcgaaagttgcagaggcc
atggaggttctgagaactgttgctcaacagcaggctaactgcccagctgatcaactggcc
tcattgtcactaaatgacaaccttgtttcttga
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