Humulus lupulus (common hop): 133804418
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Entry
133804418 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133804418
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03013
Nucleocytoplasmic transport
hlp03015
mRNA surveillance pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133804418
09122 Translation
03013 Nucleocytoplasmic transport
133804418
03015 mRNA surveillance pathway
133804418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133804418
03041 Spliceosome [BR:
hlp03041
]
133804418
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133804418
Spliceosome [BR:
hlp03041
]
Complex C
Other components
EJC/TREX
133804418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
133804418
NCBI-ProteinID:
XP_062098573
LinkDB
All DBs
Position
1:complement(235551230..235555373)
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AA seq
764 aa
AA seq
DB search
MSSPRSSPYQILDNRPIDQWKVTELKEELKKRKLITRGLKEDLVKRLDEAVRTERTISQS
DNDNDDNDNDNDNGIESSPQPAVVVKSGEKNCKGTVDGSGKKTRKVDNLPVQDDNNNSVP
ALDQGNIQEGYVLVGEDSSVVEETVVSYETTVETTVTVTESVVPDVAFSEQDSEIQKEKG
SAKSQLENEDSKSQLENEDSMSQLENEDAKAQLDSEHSKPKVENADSKHQVESSDSKPQL
ESAGSKLLESAVSKPQVESEDSKTQLEIDSTKSQLENECSKPTSEEVKLDISAPENQVSE
VRPNFGSQVKYDSISTDSVSINEKIELKDNIIADNVKLELDVIKPEMVAPSSSTIVQAGG
DLHPMDVEEPHESNTSVDEKDDNNGNNADLRKKNDNLDVGYSEKLNLDRSSGDDSMEEDV
LESKQIDSKYSSDDVGDKSEKTEVSDMKEEGHVDIVGDDFSADGKDAHVENEERPSAHAE
KRKINDESLAGNSEPLKRQRRWNSESLKIPEPQSSNITTTTPKDAFQSSALKRLARADSI
ISEDSPKERAVPPSPKSPTSSLRIDRFLRPFTLKAVQELLGKTGNVTSFWMDHIKTHCYV
TYSSVEEAIETRNAVYNLQWPPNGGRLLIAEFVDPQEVKTRVESPQVPVASANAAPVASP
NAAPVAPILSVTQAQQSPRQPRQQQQLTAPPSLPPPPPLSNPPQVRERLPLPPPPPLPEK
LDPPIVTLDDLFRKTKATPRIYYLPLSEEQVATKLAAQGKQVMQ
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaccacgatcatcgccatatcagatccttgacaatcgaccgattgatcagtgg
aaggttacagagttaaaagaagagcttaagaagaggaaattgataactagaggtttgaag
gaggatttggtaaaacgtttggatgaagcagtgcgtactgaaaggactatttctcagagt
gataacgataatgatgataatgataacgataatgataatggtattgaatctagtccacaa
ccagcagttgtagtgaaaagtggggagaaaaactgtaaaggcactgtggatggtagtggt
aagaagaccagaaaggtggataaccttcctgttcaggatgacaataataacagtgtacca
gccttggaccagggtaatattcaggaaggatatgttttagttggtgaagattcttctgtg
gtggaggagactgtggttagttatgaaactactgtagaaaccacagttacggtcactgag
agtgtggtacctgatgtagcattcagtgagcaagattctgagattcagaaagagaagggg
agtgctaagtctcagctggagaatgaggattcaaagtctcagctggagaatgaggattca
atgtcccagctggagaatgaggatgcaaaggcccagctggatagtgagcattcaaagccc
aaggtagagaatgctgactcaaagcaccaggttgagagttctgactcgaagccccagtta
gagagtgctggctcaaagctgttagagagtgctgtctcaaagccccaggtagagagtgaa
gactcaaagacccagctggaaatcgacagtacaaagtcacagctggagaatgagtgttcc
aagcctacatccgaggaagtcaagctcgacatttctgctccagaaaaccaggtatctgag
gtcagacctaattttgggtctcaagtaaaatatgattctatttctactgattctgtgtct
attaatgaaaagattgaactaaaggataacataattgctgataatgtcaaattagaatta
gatgttattaagccggagatggtggcaccatcatccagcactattgttcaggccggtggt
gacttacatcctatggatgttgaagagccacatgagagcaacacatctgtcgatgagaag
gatgacaataatggtaataatgcagatttgaggaagaaaaatgataatctagatgtgggg
tactctgaaaagttaaatttagacagaagttctggagatgattctatggaagaagatgtg
ctggagagtaaacaaattgattccaagtatagttctgatgatgtgggagataagagtgag
aaaactgaagtttctgatatgaaggaggaaggtcatgttgatattgtgggagatgatttt
tctgcagacggaaaagacgcccatgttgagaatgaagagcgtccatctgcacatgctgag
aaaagaaagattaatgatgaatcattggctggaaacagtgagcctctaaaaaggcagcgg
cggtggaactctgaaagcctaaaaattccagagccacaaagctctaatattactaccact
acacccaaggatgcgttccagtcctctgccttgaagcgccttgctagagcagactcaatc
attagtgaggattcacccaaggaacgtgctgtcccaccatcaccaaaatctccaacctct
tctctaaggattgatcggtttctgcggcccttcaccttgaaagcagtgcaagagcttttg
ggcaaaactgggaatgtaaccagtttctggatggatcacattaagacccattgctatgtt
acatattcatcagtggaagaagccattgaaacacgcaatgctgtatataacctgcagtgg
cctccaaatggtggaaggctgctcatagcagaatttgtcgatcctcaggaagtaaaaact
cgggtggagagtccacaagttcctgtagcttctgccaatgcagctcctgttgcatctccc
aatgcagctcctgttgctcctatcctatcagtcacacaggcccaacagtcccctcggcaa
cctaggcagcagcagcagcttacagcaccgccttctctccctccaccaccacccttgtct
aatcctccccaagtgagagaaaggcttcctcttccaccgccaccaccgctgccagaaaag
cttgaccctccaattgtcacattagatgacctctttcgaaaaaccaaggcaactcctcgg
atctactacttacctttgtcggaagaacaagttgccacaaaacttgcagctcaagggaaa
caagtgatgcagtag
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