KEGG   Humulus lupulus (common hop): 133804861
Entry
133804861         CDS       T11341                                 
Name
(RefSeq) pre-mRNA-processing protein 40A
  KO
K12821  pre-mRNA-processing factor 40
Organism
hlp  Humulus lupulus (common hop)
Pathway
hlp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hlp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133804861
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hlp03041]
    133804861
Spliceosome [BR:hlp03041]
 Complex A
  U1 snRNP components
   U1 related factors
    133804861
 Complex B
    133804861
SSDB
Motif
Pfam: FF FF_PRPF40A WW WW_TCERG1 FF_RHG35_4th
Other DBs
NCBI-GeneID: 133804861
NCBI-ProteinID: XP_062098963
LinkDB
Position
X:complement(129884241..129893972)
AA seq 1001 aa
MENSSQSSAPQFRPMIPNQQGQPFLPSASPQFQPVGQGMLHPNLGMPGVQSQPMHFSQPM
QPYPPRPGQGGHAMPSSQGLSMSYIQTRPIAPGPPQTQQPGPPFTNQMPGGAGMPFSSPY
SFAPSSFAQPQNNANSMLQFQSMPQMQASIPVQPWLPSGSQSAPAVTSVQQTGHQPSAAS
STDTTMNSLTQPSLSDWQEHSSTDGRRYYYNKRTKQSVWDKPLELMTPMERADASTVWKE
YSSPDGRKYYYNKVTKQSKWTIPEELKLARELAEKEGSQGSQLETGIISHGSAAAASAET
LLPVTSVALTTSLAPTGIALSPVAVTPVASLPNPSVDISGSSATPTSQSTVTSSVGVHPP
MLTVASSTPVISGTTGVSSFLTNANTTPMSTYENQVSQDIASSVDGASMQDIEDAKKGMA
VAGKINVTPLEEKLVDEEPLVYASKLEAKSAFKSLLESTNVQSDWTWEQTMREIVNDKRY
GALRTLGERKQAFNEYLGQRKKLEAEEKRTRQKKAREEFTKMLEESKELTSSTRWSKAVT
MFENDERFKAVERARDKEDLFESYIVELERKEKEQAAEEHRQNVAEYRKFLESCEFIKVN
SQWRKVQDRLEDDERYLRLEKLDRLLIFQDYVRDLEKEEEEQKKIQKDHLRRVERKNRDE
FRKLMEEHIATGSLTARTYWRDYCLKVKDLSQYQAIASNTSGSTPKDLFEDVIEELEKHY
HEDKARVKDVLKLGKVSIVSTWTFDDFKAAILEEIGSPLVSDINLKLVFEDLIDRAKEKE
EKEAKKRQRLADDFTKLLYTFKEIISTSTWEDCKLLFEESQEYRSISEESLAREIFEEYI
THLLEKAKERERKREEEKARKEKERDDKEKRKEKERKEKDRDKEKSKERSKKDDTDSETI
DISDSHGHKEDKKREKDKDRKHRKRHLSATDDMGSDKDEKDDSKKRKHSSDRKKSRKHAH
SPETDSESRHKKHRREHRDSRRNGGLEELEDGELGEDGEIP
NT seq 3006 nt   +upstreamnt  +downstreamnt
atggagaatagttcacagtcttctgctccacagtttcgaccaatgatcccaaatcagcaa
ggacaaccatttcttccatcagcatcgccacaatttcagccagttggacagggtatgctc
catcctaacttagggatgcctggtgttcaaagtcagccaatgcatttttctcagcctatg
caaccgtaccctcccagaccaggtcagggtggtcatgctatgccttcatcacagggttta
tcaatgtcgtacattcaaacaaggcctattgcacctggaccaccacagactcagcaacct
ggcccccccttcactaatcagatgcctggtggtgctgggatgcctttttcttcaccatat
tcttttgcaccttcttcttttgcccaaccacagaataatgccaactcaatgctgcagttc
cagtcaatgcctcaaatgcaagcatccattccagtacaaccttggttgccctctggaagt
cagagtgctccagcagttacctcagtccagcagactggccatcaaccttctgctgcttct
tccacagatactacaatgaatagccttacacagccatccttatctgattggcaagaacat
tcatctacagatggaagaagatattattacaacaaaagaacaaaacaatctgtttgggat
aagcctttggaattgatgacaccgatggagagagctgatgcatccactgtttggaaggaa
tatagttctccagatggaagaaagtattattacaacaaggttacaaagcaatctaagtgg
acgataccagaggaattaaagctggctcgtgagcttgctgagaaagaaggtagccaggga
tctcaattggaaactggtataatatctcatggttctgcggctgcggcttcagctgaaaca
cttcttccagttacttcggtggccttaactacttctttggcaccaactgggattgcattg
agcccagttgctgttacacctgttgcttccttgcctaatccctcagtggatatttctgga
tcttcagccacccctacttcacagtctactgtaacaagtagtgttggagttcatcctcca
atgttaactgtggcttcctcgactcctgttatttcaggaactacaggagtttcatctttt
ttgaccaatgccaatactacaccaatgagcacatatgagaatcaagtatcacaagatatt
gcaagttcagtggatggagcttctatgcaggatattgaggatgcaaaaaaaggcatggca
gttgctggaaaaatcaatgtaactcctttggaggaaaaattagttgatgaagagcctttg
gtttacgccagtaagctggaagcaaaaagtgcattcaaatcacttctggaatctacaaat
gttcagtctgattggacttgggagcagacaatgagggaaattgtcaatgacaaaagatat
ggtgctctaagaacactaggtgagcggaagcaagcgtttaatgagtacttgggtcaaagg
aaaaagctcgaggctgaagagaagcgtacgaggcagaaaaaagctagggaagaatttaca
aaaatgttagaggagtccaaagaactcacgtcatccactagatggagcaaagctgtgact
atgtttgaaaatgatgaacgcttcaaggctgttgagcgagctagagacaaagaagatctt
tttgaaagctatattgttgaacttgaacggaaggaaaaagaacaggctgctgaagagcac
cgacagaatgtagcagagtacagaaagtttttagaatcttgtgagtttatcaaggtgaat
agccagtggcgtaaagttcaagatcggttagaggatgatgagagatatttacgtcttgaa
aagcttgatcgcctgctcattttccaggactacgtccgtgacttggaaaaggaggaagag
gagcaaaagaagatccaaaaggaccatttgagacgagttgagagaaagaaccgggatgag
tttcgcaaactcatggaagagcatattgctactggcagtcttactgccagaacttattgg
cgagattactgtttaaaggttaaggatctgtctcagtatcaagctattgcatcaaatacc
tctggttcgacaccgaaagacttgtttgaggatgttattgaagaattagagaaacattat
catgaagacaaagcccgggtgaaagatgtactaaagctggggaaggtttcaattgtatcg
acttggacatttgatgacttcaaggcagcaatcttggaagagattggctcccctctggtg
tcagatataaacttaaagcttgtattcgaggatttaatagatagagctaaggagaaagag
gagaaagaagctaaaaagcgacaacgacttgctgatgattttactaagctattatacaca
tttaaggaaataatctcaacttctacttgggaggattgtaaacttctttttgaagagagc
caggaatacagatcaatcagtgaggagagtttggcaagggagatttttgaggaatatatt
acacaccttctggagaaggctaaagagagagaacgcaagcgtgaggaagaaaaagccaga
aaagagaaagagagggatgataaagagaagcggaaggagaaggagcgaaaagagaaggat
agagataaggaaaaaagcaaggaacgatctaagaaggatgatacagatagtgagactatc
gacataagtgatagtcatggccataaagaggacaagaaaagggaaaaagacaaagacaga
aaacaccgaaagcggcatctaagtgctacagatgacatgggctcggataaggatgagaaa
gatgattctaagaaacggaaacatagcagtgaccgcaaaaagtcaagaaaacatgcacat
tcacctgaaacagacagtgaaagccggcataaaaagcataggagagagcatagggactcc
cgtagaaatggtggacttgaagaacttgaagacggagagcttggggaggatggagaaatc
ccatag

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