Humulus lupulus (common hop): 133804861
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Entry
133804861 CDS
T11341
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133804861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133804861
Spliceosome [BR:
hlp03041
]
Complex A
U1 snRNP components
U1 related factors
133804861
Complex B
133804861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
133804861
NCBI-ProteinID:
XP_062098963
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All DBs
Position
X:complement(129884241..129893972)
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AA seq
1001 aa
AA seq
DB search
MENSSQSSAPQFRPMIPNQQGQPFLPSASPQFQPVGQGMLHPNLGMPGVQSQPMHFSQPM
QPYPPRPGQGGHAMPSSQGLSMSYIQTRPIAPGPPQTQQPGPPFTNQMPGGAGMPFSSPY
SFAPSSFAQPQNNANSMLQFQSMPQMQASIPVQPWLPSGSQSAPAVTSVQQTGHQPSAAS
STDTTMNSLTQPSLSDWQEHSSTDGRRYYYNKRTKQSVWDKPLELMTPMERADASTVWKE
YSSPDGRKYYYNKVTKQSKWTIPEELKLARELAEKEGSQGSQLETGIISHGSAAAASAET
LLPVTSVALTTSLAPTGIALSPVAVTPVASLPNPSVDISGSSATPTSQSTVTSSVGVHPP
MLTVASSTPVISGTTGVSSFLTNANTTPMSTYENQVSQDIASSVDGASMQDIEDAKKGMA
VAGKINVTPLEEKLVDEEPLVYASKLEAKSAFKSLLESTNVQSDWTWEQTMREIVNDKRY
GALRTLGERKQAFNEYLGQRKKLEAEEKRTRQKKAREEFTKMLEESKELTSSTRWSKAVT
MFENDERFKAVERARDKEDLFESYIVELERKEKEQAAEEHRQNVAEYRKFLESCEFIKVN
SQWRKVQDRLEDDERYLRLEKLDRLLIFQDYVRDLEKEEEEQKKIQKDHLRRVERKNRDE
FRKLMEEHIATGSLTARTYWRDYCLKVKDLSQYQAIASNTSGSTPKDLFEDVIEELEKHY
HEDKARVKDVLKLGKVSIVSTWTFDDFKAAILEEIGSPLVSDINLKLVFEDLIDRAKEKE
EKEAKKRQRLADDFTKLLYTFKEIISTSTWEDCKLLFEESQEYRSISEESLAREIFEEYI
THLLEKAKERERKREEEKARKEKERDDKEKRKEKERKEKDRDKEKSKERSKKDDTDSETI
DISDSHGHKEDKKREKDKDRKHRKRHLSATDDMGSDKDEKDDSKKRKHSSDRKKSRKHAH
SPETDSESRHKKHRREHRDSRRNGGLEELEDGELGEDGEIP
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggagaatagttcacagtcttctgctccacagtttcgaccaatgatcccaaatcagcaa
ggacaaccatttcttccatcagcatcgccacaatttcagccagttggacagggtatgctc
catcctaacttagggatgcctggtgttcaaagtcagccaatgcatttttctcagcctatg
caaccgtaccctcccagaccaggtcagggtggtcatgctatgccttcatcacagggttta
tcaatgtcgtacattcaaacaaggcctattgcacctggaccaccacagactcagcaacct
ggcccccccttcactaatcagatgcctggtggtgctgggatgcctttttcttcaccatat
tcttttgcaccttcttcttttgcccaaccacagaataatgccaactcaatgctgcagttc
cagtcaatgcctcaaatgcaagcatccattccagtacaaccttggttgccctctggaagt
cagagtgctccagcagttacctcagtccagcagactggccatcaaccttctgctgcttct
tccacagatactacaatgaatagccttacacagccatccttatctgattggcaagaacat
tcatctacagatggaagaagatattattacaacaaaagaacaaaacaatctgtttgggat
aagcctttggaattgatgacaccgatggagagagctgatgcatccactgtttggaaggaa
tatagttctccagatggaagaaagtattattacaacaaggttacaaagcaatctaagtgg
acgataccagaggaattaaagctggctcgtgagcttgctgagaaagaaggtagccaggga
tctcaattggaaactggtataatatctcatggttctgcggctgcggcttcagctgaaaca
cttcttccagttacttcggtggccttaactacttctttggcaccaactgggattgcattg
agcccagttgctgttacacctgttgcttccttgcctaatccctcagtggatatttctgga
tcttcagccacccctacttcacagtctactgtaacaagtagtgttggagttcatcctcca
atgttaactgtggcttcctcgactcctgttatttcaggaactacaggagtttcatctttt
ttgaccaatgccaatactacaccaatgagcacatatgagaatcaagtatcacaagatatt
gcaagttcagtggatggagcttctatgcaggatattgaggatgcaaaaaaaggcatggca
gttgctggaaaaatcaatgtaactcctttggaggaaaaattagttgatgaagagcctttg
gtttacgccagtaagctggaagcaaaaagtgcattcaaatcacttctggaatctacaaat
gttcagtctgattggacttgggagcagacaatgagggaaattgtcaatgacaaaagatat
ggtgctctaagaacactaggtgagcggaagcaagcgtttaatgagtacttgggtcaaagg
aaaaagctcgaggctgaagagaagcgtacgaggcagaaaaaagctagggaagaatttaca
aaaatgttagaggagtccaaagaactcacgtcatccactagatggagcaaagctgtgact
atgtttgaaaatgatgaacgcttcaaggctgttgagcgagctagagacaaagaagatctt
tttgaaagctatattgttgaacttgaacggaaggaaaaagaacaggctgctgaagagcac
cgacagaatgtagcagagtacagaaagtttttagaatcttgtgagtttatcaaggtgaat
agccagtggcgtaaagttcaagatcggttagaggatgatgagagatatttacgtcttgaa
aagcttgatcgcctgctcattttccaggactacgtccgtgacttggaaaaggaggaagag
gagcaaaagaagatccaaaaggaccatttgagacgagttgagagaaagaaccgggatgag
tttcgcaaactcatggaagagcatattgctactggcagtcttactgccagaacttattgg
cgagattactgtttaaaggttaaggatctgtctcagtatcaagctattgcatcaaatacc
tctggttcgacaccgaaagacttgtttgaggatgttattgaagaattagagaaacattat
catgaagacaaagcccgggtgaaagatgtactaaagctggggaaggtttcaattgtatcg
acttggacatttgatgacttcaaggcagcaatcttggaagagattggctcccctctggtg
tcagatataaacttaaagcttgtattcgaggatttaatagatagagctaaggagaaagag
gagaaagaagctaaaaagcgacaacgacttgctgatgattttactaagctattatacaca
tttaaggaaataatctcaacttctacttgggaggattgtaaacttctttttgaagagagc
caggaatacagatcaatcagtgaggagagtttggcaagggagatttttgaggaatatatt
acacaccttctggagaaggctaaagagagagaacgcaagcgtgaggaagaaaaagccaga
aaagagaaagagagggatgataaagagaagcggaaggagaaggagcgaaaagagaaggat
agagataaggaaaaaagcaaggaacgatctaagaaggatgatacagatagtgagactatc
gacataagtgatagtcatggccataaagaggacaagaaaagggaaaaagacaaagacaga
aaacaccgaaagcggcatctaagtgctacagatgacatgggctcggataaggatgagaaa
gatgattctaagaaacggaaacatagcagtgaccgcaaaaagtcaagaaaacatgcacat
tcacctgaaacagacagtgaaagccggcataaaaagcataggagagagcatagggactcc
cgtagaaatggtggacttgaagaacttgaagacggagagcttggggaggatggagaaatc
ccatag
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