Humulus lupulus (common hop): 133805403
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Entry
133805403 CDS
T11341
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03013
Nucleocytoplasmic transport
hlp03015
mRNA surveillance pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133805403
09122 Translation
03013 Nucleocytoplasmic transport
133805403
03015 mRNA surveillance pathway
133805403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133805403
03041 Spliceosome [BR:
hlp03041
]
133805403
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133805403
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133805403
Spliceosome [BR:
hlp03041
]
Complex C
Other components
EJC/TREX
133805403
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133805403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133805403
NCBI-ProteinID:
XP_062099560
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All DBs
Position
X:complement(186170672..186175488)
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AA seq
428 aa
AA seq
DB search
MVETKETDVYDEELVDYEEEEDKALDSVGAKVNGEAPKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVSALV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILA
LTREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLAECNFPSICIHSGMSQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaactaaggagaccgatgtttatgacgaagagctcgtcgactacgaagaagaa
gaagacaaggccctcgactccgtcggagctaaagtcaatggcgaagctcccaagaaggga
tatgtaggaatacacagttcagggttcagagacttccttttgaaaccagagcttctacga
gctattgttgactctgggtttgagcatccttctgaagtgcaacacgaatgtatccctcaa
gctattctgggtatggatgttatatgtcaagctaaatctggaatgggaaaaactgctgtt
tttgttctgtcaagtctgcagcagattgatcctgtggcgggccaagtttctgcccttgtt
ctgtgtcatacaagagagttggcttatcagatatgtcatgagttcgagaggtttagtacc
tacttgcctgatctcaaggttgcggtcttttatggaggtgtcaacatcaaactccacaaa
gatctactgaaaaatgagtgcccccatattgttgttggaactcctggaagaatattagca
ctgaccagagaaaaagatctctccttgaagaatgtgaggcattttattctagatgaatgt
gacaagatgcttgaatcacttgacatgaggagagacgtgcaagagattttcaagatgaca
cctcatgataagcaagtcatgatgttttctgcaacacttagcaaagaaatccgccctgtg
tgcaagaaatttatgcaagatcctatggaaatctatgttgatgacgaggccaagttaacc
ctgcatgggcttgtacagcactacatcaagttgagtgagtcggagaaaaaccgcaagttg
aatgacctcctcgatgcgttggatttcaatcaagttgttatttttgttaaaagtgtgagc
agagctgctgagctgaacaagttgcttgcagagtgtaattttccctctatatgtatccat
tcaggcatgtcccaggaggaaaggttgaaacgctataaaggtttcaaggaggggcagaat
aggattcttgtggctacagatttggttggtagaggaattgacattgaacgtgttaacatt
gtcattaattatgacatgccagattctgccgacacctatctgcacagggttggtagagct
ggtaggttcggcacgaaagggcttgccataacgtttgtttcttctgccgccgattctgat
gttctgaatgatgttcaggagaggtttgaggtggatataaaggagcttccagagcagatt
gatacttccacgtacatgccatcgtaa
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