Humulus lupulus (common hop): 133805875
Help
Entry
133805875 CDS
T11341
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133805875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133805875
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133805875
Spliceosome [BR:
hlp03041
]
Complex C
Other components
Step II factors
133805875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
KH_SLS1_1
Rcat_RNF216
zf-C3HC4
IBR_1
AAA_19
zf-C3HC4_2
WHD_HA2
zf-RING_2
ResIII
ABC_tran
NAT10_TcmA_helicase
AAA_29
nSTAND_NTPase5
T2SSE
Arc_MA
Motif
Other DBs
NCBI-GeneID:
133805875
NCBI-ProteinID:
XP_062100006
LinkDB
All DBs
Position
1:259534933..259541546
Genome browser
AA seq
1736 aa
AA seq
DB search
MSMNNSMGSFRPSRPPENHRRCHPPSTFHSLPNRRHQFPANHRLHRPVAPTVTRLTPVAR
SNFVVDILRDQTTTGSVTEVQALVDQCLSKPESIKVYQSGGLVASLFFRKWVDALEVVVF
LWKSRLDGAHRLMPKLNTGEIVPSARQELEDRLRAVFAESIGKLIDGDKVKHWSEKRDHL
SIEINKSTGFLRKPRGLIALDELREKKKRLILEMELVDKRLKEFKSAMRCMLAYLEGKGL
KEYNKDDIQVLRLDGGFNWSQIHSLMLRECKRLEDGLPIYAYRQGILHHIHSQQIMVLIG
ETGSGKSTQLVQFLADSGITADEAIVCTQPRKIAATSLASRVREESGGCYGDQSITCYPS
FSSDQQFNSKVIFTTDHCLLQHYMLDKNMSKISCLIVDEAHERSLNTDLLLSLVKSLLCR
RRNLRLIIMSATVDAHQLSNYFFGCRIFHVVGRNFPVDITYIPCTTGAYVSDVVRMATEI
HKTEKEGAILAFLTSQSEVELACEKFVAPNAVALPLHGKLSFEEQFYVFQNYPGKRKIIF
STNLAETSLTIPGVKYVIDCGMVKESKFEPGSGMNVLRVCRISQSSANQRAGRAGRTEPG
RCYRLYSESDFKSMPPCQEPEIRRVHLGVAVLRIFALGIKNVQDFDFVDAPSAEAIEMAV
RNLIQLSAIKRSNDNFELTDEGRCLVKMGIEPRLGKLILGCFSNRLGREGIVLAAVMANS
SSIFCRVGTDEEKMKSDCIKVKFCHQDGDLFTLLSVYKEWEAVPRDKKNQWCWENSINAK
TMRRCYDTVVELESCLERELTSIIPSYWRWNPRKSTDSDMYLKKVILSSLSENVAMYSGN
DQLGYEVALTGQHVLLHPSCSLLVYGQKPNWVVFSEILSSTCQYLVCVTSFDFDSLSTLH
PPPLFDASKIMNRKLQVKVLNGFGGTLLKKFCGKGNSNMLSLVARIRETCMDERIGIKVN
VDQNEISVFATTQDMERVLNFVKGFLECEQKWMHYECLEKCLYRGSGVPSVALFGAGAEI
KHLELQKRCLDVDIYHSNVSSLNPIEEKELLMFIEKFTSSTICAFHKSTPSGQEGDDKEK
LGQITFPSPEAALKAIELNQIKFGGALLKVTPSQPTFGDHKFFPFPAVRAKVSWPRRPSK
GFGILKCDPHDVDSMIDDFYNLEVGGKYVRSEASTRAADSVLIIGLDKNLSENEILADLR
RHTRRRIIDFFLIRGEAVENPAPDVCGEALLKQITPFMSKNNHHSAYCRVQVFPPEPKDT
FMRALVSFDGRLHLEAAKALEQIDGEVLPGCLSWQKMKCQQLFHSSLSCSERVYSVIKMQ
LDSLIRSFTHVKGIECSLERNPNGSYRVKISANATKTVAEVRRRVEDMLKGKIIDNKTLT
PTVLQLMFSRDGINLIHTLQRETGTYIFFDRHSLNVRIFGSHSNVAVAEEKMINSLVALH
ESKQLQINLRGKDLPPNLLKELVNNFGPDLRGLKKKVPGADFTLNTFRHTLSIHGDKDLK
PTVEEIIYKIAQMSCGSAERFDNDVTCPICLCDIEDAYQLEGCGHKFCSLCLVEQFDSAI
KNQDGFPIRCGHESCGSPILLTDLRSLLPGEKLDELFRSSLGAFVASSGGVYKFCPSPDC
PAIYQVADPGTAGKLFVCGSCYAETCTSCHMEYHPYLSCEKYREFKDDPDSSVKEWQSGK
DNVKNCPHCGHMIEKWEGCNHIECRCGRHICWNCLELFNSSDECYNHLRNVHMTII
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgaacaattccatgggttcgtttaggccgtcaaggccaccggagaaccaccga
agatgccatcctccctcgacgtttcattcgttgccaaatagaagacatcaatttccggcg
aatcaccggcttcatcgacctgtggcaccaactgttacccgtcttacaccggtggctcgt
tccaattttgttgtcgacatccttcgtgatcaaaccaccaccggttcggttaccgaagtc
caggccctggttgatcaatgcctgtcaaagccggagagtatcaaggtataccagtctgga
gggctcgtggcgtctctgttcttccgtaagtgggtggacgcgctcgaagtcgtggttttt
ttgtggaaatcgcgtctcgatggggctcaccggttgatgcccaaactcaatactggtgaa
atcgtgccgtctgcgcgacaggaacttgaagaccggctccgggccgtgttcgccgagagc
attggcaagttaattgatggcgacaaggtgaaacattggagtgagaagcgtgatcatctg
tcgattgagattaataagtcgacagggtttcttcgaaagccgaggggtttaatcgcattg
gatgagctacgtgaaaagaagaaaagacttatccttgagatggaattggtggataagagg
ctgaaagaattcaagtctgccatgagatgtatgcttgcttatcttgaagggaaggggttg
aaggagtataataaggatgacatacaagtgcttaggcttgatgggggtttcaattggagt
cagattcatagcttgatgttacgagagtgcaagcgcctcgaagatggtttgcccatttac
gcctataggcagggaatactccaccatattcatagccaacagataatggtcttgattgga
gaaactggttctggaaaaagtacacagctggtgcaatttcttgctgattcaggaattact
gctgatgaggccattgtttgtactcagccccgtaaaattgctgccacgtcgctggcaagt
agggttagggaagaaagtggtggttgttatggagatcagtcaatcacttgttacccatca
ttttcatctgatcagcagtttaactctaaggtaatattcacgacggaccactgtctactg
cagcactacatgctagataagaacatgtctaagatttcttgcctcattgtcgatgaggct
catgaaaggagtttaaacactgatctccttttgtcattggtaaaaagtctactttgtagg
aggcgtaatctgagacttattataatgtctgcaacagttgatgcacaccagctctccaat
tacttttttggttgtagaatttttcatgttgtggggagaaactttccagtcgatatcaca
tatataccctgtacaacaggagcatatgtgtctgatgtagtgaggatggcaacggagata
cacaaaacagagaaagaaggggccattcttgcttttttgacttctcagagtgaagtagag
ctggcatgtgagaagtttgtagctcctaatgccgtggccttaccattacatggaaaactt
tcttttgaggagcagttttatgttttccagaactatcctgggaaaagaaaaataattttc
tctacaaatctggctgagacatcactgacaattcctggggtcaagtatgtaattgattgt
gggatggtcaaagaaagtaagtttgaacctggcagtggcatgaatgtccttagagtatgc
cggatcagtcagagttctgctaatcaacgagctggccgagctggaagaacggagcctgga
aggtgttatagactttattcagaatctgatttcaagtcaatgcctccttgtcaggaacct
gagattcggagagttcatcttggtgttgctgttttgagaatctttgctttgggcattaag
aatgtgcaggattttgattttgttgatgcacctagtgctgaagcaattgaaatggctgta
aggaatttaattcagttaagtgctatcaaacgaagcaatgacaattttgaattaacggat
gaaggtcggtgcttagtgaaaatgggaattgaacctcggcttggtaaactgatactcggt
tgcttcagtaatcgtttgggtagagagggaattgtacttgctgctgtaatggcaaattct
agtagcatattttgcagagttggaactgatgaggaaaaaatgaagtctgattgcatcaag
gtaaagttttgccatcaggatggtgacctctttactctactctctgtgtacaaggagtgg
gaggctgtaccgagagacaagaaaaaccagtggtgttgggagaacagcatcaatgccaag
accatgcgaagatgctacgacactgttgtggagttggaaagttgccttgaacgcgaacta
acttcaatcattcctagttattggcgttggaatcctcgcaagtcaacagattctgatatg
tatttgaaaaaggttatactctcttctctatcagaaaatgtagctatgtactctggaaat
gatcaacttggttatgaagtggcattaactggacaacatgttctgctgcatccatcatgt
tcgttgcttgtgtacggtcagaagcccaattgggtagtttttagtgagatactatccagt
acttgtcaatatttagtctgtgtcacctcctttgattttgactctttgtccactcttcac
ccccctcccttgtttgatgcatctaaaataatgaatcggaaattgcaagtgaaggtattg
aatggttttggtggtactttgcttaaaaaattttgtggaaagggaaatagtaatatgctt
tctcttgtagcacgtattcgggaaacatgcatggatgaacgtattggtattaaagtcaat
gttgaccaaaatgaaatttcggtatttgctactacacaagacatggaaagggttctcaac
tttgtaaagggtttcctggagtgtgagcagaaatggatgcattatgaatgtttggagaaa
tgcttatatcgtggatctggtgtgccatctgtagcactgtttggagccggtgctgagatt
aagcatttagaacttcaaaaaagatgtttagatgttgatatatatcattcaaatgtcagt
tccttaaatccaatagaggagaaggaacttttgatgtttattgagaagtttacctccagt
accatttgtgcttttcacaagtccaccccttcagggcaggagggtgatgacaaagaaaag
ttggggcagataacatttccttcacctgaagcagctctaaaagctatcgaactgaatcaa
attaaatttggtggcgccctactcaaggtaactccatcacagccaacttttggagaccac
aagttttttcctttccccgctgttagagctaaggtatcttggcctcgtaggcccagtaag
gggttcggaattcttaaatgtgacccacatgatgtagattctatgattgatgatttttat
aatcttgaagttggaggaaagtatgtgcgtagtgaagctagtacaagggcagcagattct
gtattgattattgggcttgacaaaaatttatcagaaaatgaaattcttgctgatttaagg
cgtcatacgagaaggagaatcattgattttttccttataagaggagaggcagtagagaat
ccagctcctgatgtttgtggagaagcacttctaaagcaaattactccatttatgtcaaaa
aacaaccaccacagtgcttattgccgggtgcaagtcttcccacccgaaccaaaagacact
tttatgagagcacttgttagctttgatggaagattacatttggaggcagctaaagctttg
gaacaaatagatggtgaagtattgcctggatgtctctcgtggcaaaagatgaagtgccag
cagttatttcatagctctttatcatgctcagagcgtgtctattctgtaatcaagatgcaa
ttggattcattgattcgaagctttacacatgtgaaaggcatagaatgcagtctagagcga
aatcccaacggttcttatcgggtaaagatatctgccaatgctacaaaaactgttgccgag
gtgcggaggcgtgtggaagatatgctgaaagggaagatcatagacaacaagacccttact
ccaactgttttgcagcttatgttctccagagatggcatcaatcttattcacactctgcaa
agggagacaggaacctacattttctttgataggcatagccttaatgtacgcatttttggt
tctcacagcaatgttgctgtggcagaggagaaaatgatcaactcccttgttgctctccat
gaaagcaagcaacttcagatcaatcttcgtggaaaagacctacctccaaatttgttgaaa
gaattggtcaacaactttggaccagatctccgtgggcttaaaaagaaggtacccggggca
gattttactctaaatacttttaggcacaccctaagtattcacggagacaaggacttgaag
ccaacggtggaggagataatttataagattgcacaaatgagttgtggttctgccgagaga
tttgacaatgatgtaacttgccctatctgcttgtgtgatatcgaggatgcttaccagctt
gaaggctgtgggcataagttttgttcgctctgcttggtagaacagtttgattctgctata
aagaaccaagatggtttcccaattcgctgtggacacgaaagttgtgggtcacccattttg
ttgacagatctaaggtctcttttaccgggtgagaagctggatgagctctttagatcttct
ttgggggcatttgttgcatcaagtgggggtgtttacaagttttgcccatctcctgactgc
cctgcaatctatcaggtggctgatcccggaactgctgggaaactatttgtctgtggttct
tgttatgccgagacatgtactagttgccatatggagtatcatccctacttgtcctgtgag
aagtaccgagagttcaaagacgacccggattcatctgtgaaggaatggcagagcggaaaa
gacaacgtgaagaactgcccccactgtgggcacatgatcgaaaagtgggaaggctgcaac
catatagagtgcaggtgtggaagacacatttgctggaactgcttagagcttttcaatagc
agcgacgagtgctataaccatctcaggaatgtccacatgaccattatatga
DBGET
integrated database retrieval system
