Humulus lupulus (common hop): 133806705
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Entry
133806705 CDS
T11341
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03030
DNA replication
hlp03420
Nucleotide excision repair
hlp03430
Mismatch repair
hlp03440
Homologous recombination
hlp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133806705
03420 Nucleotide excision repair
133806705
03430 Mismatch repair
133806705
03440 Homologous recombination
133806705
03460 Fanconi anemia pathway
133806705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlp03000
]
133806705
03032 DNA replication proteins [BR:
hlp03032
]
133806705
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133806705
Transcription factors [BR:
hlp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133806705
DNA replication proteins [BR:
hlp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133806705
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133806705
MMR (mismatch excision repair)
133806705
DSBR (double strand breaks repair)
HR (homologous recombination)
133806705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
DUF223
Rep_fac-A_C
TPR_Vps41
Cna_B
Motif
Other DBs
NCBI-GeneID:
133806705
NCBI-ProteinID:
XP_062100781
LinkDB
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Position
X:complement(211327168..211331553)
Genome browser
AA seq
386 aa
AA seq
DB search
MERQVKSIKEIFPRSKNWIYKVLAAEKHPPRNSRHNSSIFQHLLLVDKEGKRIQATIFEE
NIQKYEKLIIMFKTYNISNALVNFIPQQYRIVDNKYQWIINEHTTVKEVEDEEIINTPQE
LYNFSFVPFNALEQYKTRTMEVDILALVIDIQPRKYIPTSSGVSCVRELTLLNEEKSQIL
LTVWDELFENECAIIASKIGARPVLATKNLKVVSYMNTSLSTKPASRLLIDLELPQAIGL
RTWRDENNMYLEHFVSRDLLASSTLTIPTSDALTPIITVKNLVEQKDRFWIEGKFCVRNL
NQNFWYMACDKCHKSTQKEFNEPVEKDHCNNKDGKAIPRCFVLVECEDTSGVLPAAIFGE
NAEKFIHCSALELMKHTTEVSNIMMQ
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggagaggcaagtcaaaagcataaaagaaatattccctcgaagtaaaaattggatctac
aaggtattagcagctgagaagcatcctcccagaaattctcgccataattcctccatattt
caacaccttctgcttgttgacaaggagggaaaaaggatacaagctacaatctttgaggaa
aatatacaaaaatatgaaaagttaataattatgtttaagacttacaacatctcaaatgct
ttagtcaatttcattccacaacaatatcggatagttgataataagtatcagtggatcatc
aacgagcacactactgttaaggaagttgaagatgaagaaataataaatacaccacaggaa
ctttataacttctcttttgtgccattcaatgctttggagcaatataaaactcgcacaatg
gaagttgatatcctggctttagtcatcgacatacaaccacgaaaatatatcccgacatca
tctggtgtgagttgtgttcgagaattgactctactgaatgaagaaaaatcacaaatactg
ctgactgtgtgggatgagctgtttgagaatgaatgtgctattattgcaagcaaaattgga
gcaagacctgttctagcaaccaagaaccttaaagttgtttcatatatgaacacatcactc
agcacaaaacctgcaagtcgcctcctaattgacctagaactaccacaagcaattggacta
cgcacctggcgtgatgaaaataacatgtacttagagcactttgtttctagagaccttcta
gcttcatcaaccttgactatacctacaagtgatgcacttacaccaatcattactgttaaa
aatcttgtagaacagaaagataggttttggattgaaggaaaattttgcgtgaggaactta
aatcaaaatttttggtatatggcttgtgataaatgtcacaaatctacacagaaagagttc
aacgaacctgtagagaaagaccactgcaacaacaaagatggcaaagcaatacccaggtgt
tttgttctggttgaatgtgaagatacttctggagtgttacctgcagcaattttcggagag
aacgcagaaaagttcattcactgcagtgctcttgaattaatgaaacacaccaccgaggta
tctaacattatgatgcaataa
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