Humulus lupulus (common hop): 133807454
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Entry
133807454 CDS
T11341
Name
(RefSeq) nuclear poly(A) polymerase 4-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133807454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133807454
Enzymes [BR:
hlp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
133807454
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
133807454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
133807454
NCBI-ProteinID:
XP_062101777
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All DBs
Position
X:complement(89587024..89593745)
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AA seq
955 aa
AA seq
DB search
MVGSQNPNGSSSPAKKYGITKPISVAGPTDADLHRNDNLEKFLINSGLYESQEEAARREE
VLGRIAEIVKDWVKVLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSY
VNREEDFFIVLHNILAEMEDVAELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPKDL
DISHGSVLFEVDEQTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGVYSNVTG
FLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPVWDP
RKHPRDRFHLMPIITPAYPCMNSSYNVSASTLRVMTEQFQCGNRICEDIELNKVQWSALF
EPYLFFEAYKNYLQVDILAVDADDLLAWRGWVESRLRQLTLKIERDTNGMLQCHPHPHEY
VDTSRSSAHCSFFMGLQRKEGVKGQEGQQFDIRETVDEFRQDVNMYMFWKPGMDMFVSHV
RRKQLPAFVFPDGYKRSRLSRHISPQAKKFSEDAAGCQPSSAEKKRKNDSDAVDAKPVKL
HKQDSASPQRPSSVSPNSNLSGGVRLEFLGTDDSNCGSEFRSSGGLLESDKNISGKNVEI
FQNITAELISSHLIPQAKETSEDAAVSQPSSAEKKRNNDSEAVNVKPIKQQKRISVGPQQ
PASVSPKSNRSGSVRLECLETGDANCSSEFRCSGGLLESEKHMLSNNAEMAQYVAKELVS
RNISQQAKESREDAAGCLPSSTSTRKCQNDSEAMDVKPVKEQKQASTSPQQSASGSPESN
RSGGVRSECLRNGGAKCTSEDTIGSHVEMAQKSMQESVFLKEQTFICVSDLPGPGHEFRP
VDLTESGVSCAVPCSEFKEIHQVGHNGERVGNLTLVDMANVESTTAGRLLNWAEGAVDVD
SELVKPYNQTSIIENAEQAFNPTSNVKILNCEGDVYAAAGSDSFTTGSGLLQTGL
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggtgggttctcagaatccgaatgggtcatcatcgccggccaaaaagtacggcatcacg
aagccaatctctgtcgcgggtcccaccgacgcggatcttcatcggaatgataatttggaa
aagttcttgattaattcggggctttacgagagccaagaagaagctgctaggagagaggag
gttcttggtcgcattgcagagattgtaaaggattgggtgaaggtgttaactcgccaaaga
ggctatacagatcagatggtggaggatgcaaatgctgtcatattcacctttgggtcctac
agattaggagtgcatggaccgggggctgacattgacaccctgtgtgttgggccatcctat
gtgaatcgagaggaagatttttttattgtcttgcacaatatactggctgaaatggaagat
gttgcagaacttcaaccagttcctgatgctcatgtcccagtaatgaaattcaagttccaa
ggaatttcaattgatcttctgtatgcaagtatatctcttttggttgttccaaaagatctg
gacatctctcatggatctgtgctatttgaagtggacgagcagactgttcgaagtcttaat
gggtgtagggtagcagatcaaattcttaaacttgtcccaaatatagagcattttcgtaca
actctcagatgtttaaaattttgggctaaaaggcgcggtgtttattcaaatgttactgga
ttccttggtggtgtcaactgggctcttttagttgctcgagtatgtcagctttatcccaat
gcaattcctagtatgctggtttctagatttttcagggtttatacacaatggagatggcca
aatcctgtgatgctctgttctattgaggagaatgaacttgggttccctgtttgggatcct
cgcaaacaccctcgagatcgatttcatcttatgcccataataactcctgcttacccatgc
atgaattctagttacaatgtctcagcaagtactttacgagttatgacagagcagttccaa
tgtggtaacaggatttgtgaggatattgagttgaacaaggtccagtggagtgctctgttt
gagccatatctatttttcgaggcgtacaaaaactacttgcaggtggatattctagcggtc
gatgctgatgatttgctagcatggaggggatgggtagagtctcggcttaggcagcttaca
cttaagatagagcgggatacaaatgggatgttgcaatgccatcctcacccacatgagtat
gtagacacatcaaggtcatctgcacattgttctttcttcatgggcttgcagaggaaagag
ggagtgaagggtcaagaaggtcagcagtttgacatccgtgaaacagttgacgaatttagg
caagacgtaaacatgtatatgttttggaaacctgggatggatatgtttgtttcacatgtc
cgtagaaagcaactacctgcctttgtctttcctgatgggtacaaacggtctcgattgtcc
aggcacataagcccacaggccaaaaagttcagtgaagatgctgcagggtgccagccttcc
tctgctgagaagaagaggaaaaatgattctgatgcagtggatgcaaagccagtcaaactg
cataagcaagactctgctagcccacaacgaccatcttctgtatctcccaatagtaatttg
tctggtggtgttagattagagttcttaggaactgatgattcgaactgtggttctgagttt
aggtcttctggtggactgttggagagtgacaaaaatatatcagggaagaatgtggagatt
tttcaaaatatcacggcagaactcatttctagtcatttaattccacaggccaaagaaacc
agtgaagatgctgcagtgtcccagccatcctctgctgaaaagaagaggaataatgattct
gaagcagtgaatgtgaagccaatcaaacaacagaagcgaatctcagttggtccccaacaa
ccagcttctgtctctcctaaaagtaataggtctggtagtgttagattagagtgcctggaa
actggtgatgccaattgcagttctgagtttaggtgttctggtggactgttggagagtgaa
aagcatatgcttagcaataatgcagagatggctcaatatgttgcgaaagaacttgtctca
agaaacataagccaacaggctaaagaatctagagaagatgccgcagggtgcctgccttct
tccacttctacaaggaagtgtcaaaatgattctgaagcaatggatgtgaagccagtcaaa
gaacagaagcaagcctctacaagtccacagcaatcagcttctggatctccagaaagtaat
aggtctggtggtgttagatcagagtgcctaaggaatggtggtgcaaagtgcacatctgag
gatacaattgggagtcatgtagagatggctcagaaatctatgcaagaatccgtttttctg
aaagagcagacatttatatgtgtatctgatttgcctggccctgggcatgagttcaggcca
gttgatttgactgagtctggtgtctcatgtgcagtaccttgttcagaattcaaggaaata
caccaggttggacataacggagagagagttgggaatttgacattagttgacatggcaaat
gtggaaagtacaactgctgggaggctgctgaattgggcagaaggtgctgttgatgtcgac
tcggagctagtcaaaccatataatcaaacatcaatcatagagaatgccgaacaggcattt
aatccaacttctaatgttaagatcctcaattgcgagggtgatgtatatgctgctgcaggt
tcagatagcttcactaccgggagtgggttgcttcagactgggttataa
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