Humulus lupulus (common hop): 133812843
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Entry
133812843 CDS
T11341
Name
(RefSeq) small RNA degrading nuclease 1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133812843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hlp03009
]
133812843
Ribosome biogenesis [BR:
hlp03009
]
Eukaryotic type
Pre-60S particles
RNases
133812843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
133812843
NCBI-ProteinID:
XP_062102649
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All DBs
Position
1:309595093..309599539
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AA seq
479 aa
AA seq
DB search
MEDLLATAEKKALVEIVKLVQKRGFKGSKGEWKEFLSGYDKKFGAKLSDPAKRSNEVLVS
FLKTFDDEEHLKYVTQLIQSYSKRNLVQKFTRAPDNESPEQMLVRLTLEHPQYPLEYSFP
SKDQGWIVTKLGKMSNVMSSENILAVDCEMVLCVDGTEAAVRVCVVDRNLQVKLNELVNP
KKEVADYRTEITGITAADLEGVTCTLADVQKSMMKILSSGNILAGHSLSNDLNVLKIDHA
WVIDTSYIFRYSEGPISRRPSLNNLCKSLLGYEVRKAGSPHNCLDDACAAMKLVLARIEQ
KASDTIPYKEVNVVPEIEMPKLLLHRIPSHVPSEELLKVIPGDFTIETKSNRRIKGDKYT
AFAFFKNLQEAEEAYEKVEGSILKDTLGRPQKLITCKLSTGETYSLCVRSTGRGDCFDGD
LSKKRAVEVQETSKVSKKLKSDEKIEEETPAEDKGSKQKLKSKKVSKHKKNKKGKKKRA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggaggacctgctcgctaccgctgagaaaaaggcccttgttgagattgtgaagttggtc
cagaaaagaggattcaagggcagtaaaggagagtggaaagagtttttgagtggttatgat
aaaaagtttggggctaaattgagtgacccggcaaagaggtctaatgaagttttggtttct
tttttgaagacatttgatgacgaggagcatttgaagtacgtgactcaactaattcaatct
tattcaaagcgcaacttagttcagaagtttacaagagctccagataatgagtcacctgag
cagatgctggttcgcttaactcttgaacacccccaatacccattagagtattcgttccct
tcaaaggatcagggttggattgttaccaagcttgggaaaatgtccaacgtgatgagttca
gaaaacattcttgctgttgactgtgagatggttctgtgcgtagatggaactgaagcagcg
gtgagggtgtgtgtagtggatcgcaatttacaggtcaaattgaatgaacttgtaaatcct
aagaaagaagttgcagattatagaactgaaattacaggaattactgcagctgatctggag
ggagttacatgcacattggcggatgtacagaaatcaatgatgaagatattatcaagtgga
aatattttagcaggccacagcttaagtaacgatctcaatgtattgaagatagaccatgca
tgggtgattgatacctcttacatattcagatattcagagggacccatcagtagaagacct
tctttgaataatttgtgcaagtctttgttgggctatgaagtgcggaaggcgggttctcca
cataattgtttggatgatgcttgtgctgccatgaagcttgttcttgctaggatagagcaa
aaagcaagcgatactattccctacaaagaagtgaatgttgtgcctgaaattgaaatgccg
aaactactacttcacaggattccatcacatgtacctagtgaagaattacttaaggttatt
cctggggacttcacaattgaaactaagtcaaataggagaattaaaggagataagtacact
gcctttgctttctttaaaaatttacaagaagcagaggaagcatatgaaaaagtggaaggc
agcatcttgaaggatacgttgggacggccgcagaaactcatcacatgcaaactcagcaca
ggtgaaacttatagtctgtgtgttcgtagtacgggtcgcggtgattgctttgatggggac
ttgtctaagaagagagctgttgaagtacaggagacctcaaaagtatcaaaaaaattgaaa
tcagatgagaagattgaagaggagacaccggcagaggataagggatcgaagcaaaaactt
aaaagtaaaaaggtatccaagcacaaaaagaacaagaaaggaaaaaagaaacgagcttag
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