Humulus lupulus (common hop): 133817906
Help
Entry
133817906 CDS
T11341
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
hlp Humulus lupulus (common hop)
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hlp03036
]
133817906
Chromosome and associated proteins [BR:
hlp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
133817906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
PHD_2
VPS18_RING_C
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
133817906
NCBI-ProteinID:
XP_062106528
LinkDB
All DBs
Position
2:62295816..62307069
Genome browser
AA seq
1805 aa
AA seq
DB search
MSYQQPSVSASGSGPLGWNQRGIGLTNTIHSEVAPCLPLPSLPVFCGASDPELSLFDEPN
RSGFCALNRSEVLAQSGRIADLLRQTDVSYLNLREDSREVSYGYLEPLNLHDEVLRFNPE
AFDFSNPGPIKDQISTGTVPEKTFEPTIPTPSHVPRDYVTTRSRQFNQAPAHDVSMSSSR
KTRAKRKVTENISTSVEPDPTEIQDAVISGFCELVDDFCGRAEIFGDDQDEAEWISLPLS
DIRNIVNEIISIRSKKLLHMLPVDSLVRLLTVLDQQIHRAEGLSINDCDHSDSDVFSSIF
CALESIHAVLAVMAHNEMPKQLYKEEIIERVLEFSRHQIADIMCAYDPSYCALHRPSDNG
TLEAEEDEDYDPEIGSATKRRRTVKTVKVKRSAVNKVSASVNTMLQKMCTILGLLKDLLM
MEKLSDSCILQLVKTSFTTFLVDNIQLLQLKAIGLLSGIFYSYSQHRTYVIDELLQLLCK
LPFSKRALRAYHLPDEEQKQIQMITALLIQLVHCSSNLPEALRQASNGNPMLELSLEANY
PTKCLEAATEACCLFWTRVLQRLANLKTQDASELKVMMENLVTDLLTTLNLPEYPASAPI
LEVLCVLLLQNAGPKSKDITARSMAIDILGTIAARLKRDAVFCSKENFWILQEMGSKDET
EENYPKDACSICLEGKVERLFLMCQDCQRMFHADCMGVKEHDISNRGWHCQICLCRKQLL
VLQSYCKSQCKDDGKKDKSRTEKKSESSFSITEPEIIQQLLLNYLQEASSADDVHLFVRW
FYLCLWYKDDPKSEQKLMYYIARLKSKEIVRDSGSVSSLLKRDLVKKVTLALGQNNSFSR
GFDTILNMLLVGLREHSPVIRAKALRAVSIIVEADPEVLRDKRVQLAVEGRFCDSAISVR
EAALELVGRHIASHPDVGLQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNPNFSEFSRA
CIEIISRVGDEESSIQDLVCKTFYEFWFEELSGSQMQGYGAGSSVPLEVAKKTEQIVEMM
KRMPNHQYLVTVITRNLVLDFFPQSAKAVGINPQSLASVRKRCELMCKCLLERILQVEEM
SGQEIEMRGLPYVLVLHSFCTVDPTLCAPASDPSQFVVTLQPYLKSHSDNKAVAKLLESI
IYIIDSVLPLLRKLPQSVIEELEQDLKHMIVRHSFLTVVHACIKCLCAASKIAGKGATVV
EYLIQVFFKRLDALAVENKQQVGRSLFCLGLLIRYGHSLLGSSGNRAVDVAHSIKLFKKY
LHMDDFVLKVRALQALGFVLIARPEFMLEKDIGKMLEVTLASGSDDRIKMQSLQNMYEYL
LDAESQLGSDTTADNKTVQYSVEGGQAVPVAAGAGDTNICGGIVQLYWDNILGRCLDLNE
QIRQAALKIVEVVLRQGLVHPITCVPYLIALETDPLEVNSKLAHHLLMNMNEKYPAFFES
RLGDGLQMSFTFIQSISSSSEHLNAKIQSKPPNNAKGKTDPVSLTQARLGVSRIYKLIRA
NRISRNKFMSSIVRKFDNPNWSTSVVPFLMHCTEILALLPFTLPDEPLYLIYAINRVIQV
RAGVLEAKLKALSLHLSQRVSSRENGRVRDESSAQHIIPNEMTTMNMSGTIYQEETSHNH
MLSMDLNGTVKPEPEDQNVTPDQGESSDISKEDEQMIQADCLSAIALQLLLKLKRHLKIV
YSLNDARCQAFSPNEPLKAGEVFSRQTIPFNISDTRMNLPTTYQELVEVYQEFKNALKED
TVDYSTYTANIKRKRPTPRKGRKAAVPMTGGDDDDDDDDDDWSGGARRLSSSGRKAVNTR
SRVRL
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcagcaaccctccgtttcggcatccggctccggtcccttgggctggaaccaa
cgcggcatcggtctcaccaatacaatacactctgaggttgcgccttgcttgcctttgcct
tctcttcccgtcttctgtggtgcttcagaccccgaactcagtttgttcgacgagccgaat
cggagtggtttctgtgcgttgaatcggagtgaggttcttgctcagtcgggtagaattgct
gatctgcttcgacaaactgatgtctcttacttgaacctcagagaggattccagagaagtt
tcgtatggttatctggaacctttaaatcttcatgatgaagtgcttagatttaatccagaa
gcatttgacttcagtaatccaggtcctattaaggaccagatctctactggtaccgtacct
gagaagacctttgagccaactatacctactccaagtcatgttccgagggactatgttaca
actcgcagtcggcagtttaatcaagctcctgctcatgatgtatcaatgtcatcttccaga
aaaacaagagccaagaggaaagtcaccgagaacatttcaacatcagttgaaccagatccc
actgaaattcaagatgcggtcattagtggtttttgtgaattggtggatgacttctgtggc
agagctgaaatatttggtgatgaccaggatgaagcagagtggatctccttgcctctttct
gatattagaaacattgtaaatgaaataatttctattcgttcaaagaaacttctacatatg
cttcccgtagacagtcttgttagacttttgacggttttggatcagcaaatacatcgagct
gaaggcttgtcaattaatgattgtgatcattctgattcagatgtcttttcatcaattttt
tgcgcgcttgagtccattcatgcggttttagcagtgatggctcacaatgagatgccaaag
caactatataaagaagagataattgaacgagttctcgagttttctcgtcatcagattgca
gatatcatgtgtgcttatgatccatcatactgtgctttgcatagaccaagcgataatggg
acacttgaagctgaggaagatgaagattatgatcctgagattggctcagcaaccaagaga
cggcgtactgttaagactgttaaagtgaagagatcagcagtaaacaaggtttctgcttct
gttaataccatgcttcaaaagatgtgcactattcttggtttgcttaaggatctgttgatg
atggagaagttgtcagatagttgtatcttacaattagtgaaaacaagctttacaacattc
ttagtggacaatattcagctcttgcaactcaaggcaattggtttgcttagtgggatattc
tattcgtactcacaacataggacttatgtgatagatgagttactacagctcctttgtaag
ttgccattctccaagcgagctttgagagcctatcacttacctgatgaggaacaaaagcag
attcagatgataactgctttacttattcagttggtccactgtagctcaaaccttcctgaa
gcattaaggcaggcatcaaatggtaatcccatgttggaattatcacttgaagcaaattat
ccaacaaaatgtcttgaggccgctactgaggcctgttgcttattttggacccgtgtactt
cagcgccttgctaatttgaaaacacaggatgcatctgaattgaaagtaatgatggaaaat
cttgttactgatttgctgacaacactaaaccttccggaatatcctgcttctgctcctata
ctagaggtcctttgcgtgttactactccagaatgctgggccgaaatctaaggacattact
gcacgttctatggccattgatattcttggtacaattgctgcaaggttgaagcgagatgct
gtattttgcagcaaagaaaatttttggatattacaggagatgggcagcaaggatgagact
gaagagaattatccaaaagatgcatgctctatttgtttggaggggaaagttgaaagattg
tttctgatgtgccaagactgccaaagaatgtttcatgctgattgcatgggagtaaaagaa
catgacatttctaacaggggatggcactgtcagatttgcctttgcaggaagcaacttctt
gttttacaatcctactgcaagtcacagtgcaaagatgatgggaaaaaggataaaagtcga
acagagaaaaagtctgagtcttctttttctattacagaaccagagattatccagcagtta
cttttaaattaccttcaagaggccagctcagctgatgacgtgcatctctttgttcgttgg
ttttatctctgcctgtggtacaaggatgatccaaaatcagagcagaagttaatgtactac
attgctagactaaagtcaaaagaaatagtgcgggattctggctctgtttcttcattattg
aaaagagatttagtcaagaaggttactttagctttgggacaaaataattctttctccaga
gggtttgatacaattcttaacatgcttttggttggtttaagggagcattctcctgtaata
agagcaaaggctttgcgagcggtcagtatcattgtagaagctgatcctgaggtactacgt
gacaaacgtgtgcaattggcagttgaaggaaggttttgtgattctgcaatatctgtaaga
gaagcagcattggaacttgttggcaggcatattgcctcacatcctgatgttggtttgcag
tattttgagaaggttgcagaaagaatcaaagacactggagttagtgtcaggaaacgagct
atcaaaatcattcgtgatatgtgcacttcaaatccaaacttctctgaattctcaagggct
tgcattgagatcatctcacgggttggtgatgaagaatcaagcatacaggaccttgtttgc
aagacattttatgagttttggtttgaagaactgtctggttcacaaatgcaaggctatgga
gctggaagttctgttccattggaggtggccaaaaaaactgagcagattgttgagatgatg
aagaggatgccaaaccatcaatatctggtcactgtcattacacggaacttagtgcttgat
ttttttccacaatcagctaaagctgttggtatcaaccctcaatctcttgcatcagttcgt
aagcgctgtgagttaatgtgcaagtgcttattggaaaggatattacaggtggaggaaatg
agtggccaggaaatagaaatgcgtggacttccatacgtactggttttgcattcgttttgt
actgtggatccaacgctatgtgcaccagcttcagacccttcacagtttgtggtcactctt
cagccgtatcttaagagtcattctgataataaagcggttgcaaagttattggagagcata
atctatatcattgattctgtgctccctttgcttcgcaagttacctcaaagtgttattgaa
gagctagagcaagacttgaagcatatgattgttcggcattccttcttgactgttgtccat
gcttgcatcaagtgcctatgtgctgcgagtaaaattgctggaaaaggtgctactgtggta
gagtatctcattcaggttttcttcaaacgtttagatgctctggcagttgagaacaagcag
caggtgggccggtctcttttctgtcttggattactcattcgctatggccattctttgctg
ggtagctccggtaatagagcggttgacgtagcacacagtatcaagttatttaaaaagtat
cttcatatggatgattttgtgttaaaggttagagcattgcaggcattaggctttgttcta
attgcgaggcctgaatttatgttggaaaaagatattgggaaaatgttagaggtgaccctg
gcatctggctccgatgatcgcattaagatgcaatcactgcaaaacatgtatgaatatctt
cttgatgcggaaagccaattgggatcagatactactgctgataacaagacagttcagtat
tctgtagaaggtggtcaggcggtaccagttgctgctggtgctggagatactaatatctgt
ggtggtatagttcagttgtactgggataacatactaggaagatgtttggatcttaatgaa
caaattcgccaagctgctcttaagattgttgaagttgttctgcgccaaggtcttgttcat
ccaattacatgtgttccataccttatagcactagagacagatcctctggaagtgaactca
aagttggctcatcatttactcatgaatatgaatgaaaagtaccctgctttttttgagagc
cgcttaggggatggccttcaaatgtcttttacgtttatacaatccattagctcaagttct
gagcatttgaacgcaaaaatccaatccaaacctcctaacaatgcgaaggggaaaactgat
cctgtttcgttgactcaagcaaggctaggagtttctcgaatctacaagcttattcgtgca
aatcgaatttcaaggaacaaatttatgtcatccatcgtgcgcaaatttgacaatcccaat
tggagtacttcagtagtacctttcttgatgcactgcacggaaattctagctttgctacca
ttcacgttacctgatgaacccctctatttgatttatgctataaatcgagtaatacaagtt
agggctggtgtgcttgaagcaaaactgaaagctttgagtttgcatctttcacaaagagtt
tcctctcgtgagaatggaagagttagagatgaatccagtgcccagcatattattcctaat
gagatgactactatgaacatgagcgggacaatttatcaagaggagacatctcataatcat
atgttgtcaatggatttgaatggtacagtgaaaccagagccagaagatcaaaatgttacc
ccagatcagggtgaatcttctgacatctcaaaagaagacgagcagatgatccaggcggat
tgtctgtctgctattgctttgcagcttcttctgaagttaaagagacacctgaagatagtt
tatagcctgaatgatgcgcgttgtcaggctttttctccaaatgaaccccttaaggcggga
gaggtgttttccaggcagaccattccttttaacatcagcgacacacgcatgaacttgcct
acgacttatcaggaattggtagaagtatatcaggaattcaagaacgcactcaaagaagat
actgttgattactcaacttacacggcaaacatcaagaggaaacgcccaacccctagaaaa
gggaggaaagctgctgtgccaatgaccggaggggacgatgatgatgatgacgacgatgat
gattggtcaggtggggctcgaaggctgagtagtagtgggaggaaagccgtcaacaccagg
agtagagtccgattatag
DBGET
integrated database retrieval system
