Humulus lupulus (common hop): 133819664
Help
Entry
133819664 CDS
T11341
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
hlp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133819664
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133819664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133819664
04121 Ubiquitin system [BR:
hlp04121
]
133819664
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133819664
Enzymes [BR:
hlp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133819664
Spliceosome [BR:
hlp03041
]
Complex B
Other components
Prp19 complex
133819664
Complex C
Prp19-CDC5 complex
133819664
Ubiquitin system [BR:
hlp04121
]
Ubiquitin ligases (E3)
U-box type E3
133819664
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
133819664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Vps41
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_DCAF12
U-box
Beta-prop_DCAF4
zf-Nse
WD40_like
Beta-prop_VPS8
PAS_11
V_ATPase_I_N
PUMA_CC
WDR54
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
133819664
NCBI-ProteinID:
XP_062108949
LinkDB
All DBs
Position
2:287426052..287433427
Genome browser
AA seq
522 aa
AA seq
DB search
MNCAISGEVPEEPVVSKNSGLLFEKRLIERHISDYGKCPITGEPLTMDDIVPVKTGKIVR
PRPVQAASIPGMLGMFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARSLLAQAERHIPSSTPITVNASAVSNGRTVTPDEVGPGGKKICPGISASIFDELT
ECNAALSQQRKKRQIPSTLAPVDDLERYTQISSHPLQKTSKPGIASIDIHYNKDIIATGG
FDTNAVIFDRSSGEILSTLSGHSKKVTSVKFVARDDLFLSSSADKTVRIWQGSDDGNYNC
NHVLKDHNAEVQAVTVHATNNYFVTASLDNTWCFYELSSGLCLTQVEDSTGSDGGYTSAA
FHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGAVTAISFSENGYFLATAASDGVKL
WDLRKLRNFRTFAPYGSETPTSSVEFDHSGSYLALAGADIRVYQVANVKSEWNCIKTFPD
LSGTGKATCVKFGPDAKYLAVGSMDRNLRIFGLPGDSEAMES
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaactgcgcaatctccggcgaggtgccggaagagcccgtcgtctcaaagaactctggc
ttgctcttcgagaagcgtttaatcgaaaggcacatatcggattatggaaaatgcccaata
acaggtgaaccccttactatggacgatattgttcctgttaaaactggaaagatagttcgg
ccaaggcctgtacaagctgctagcatccctggaatgcttggaatgttccagactgaatgg
gatagtttgatgctatccaattttgcattggaacaacagcttcatactgcacgacaggag
ttaagtcatgctctataccagcatgatgctgcatgccgtgtgattgcaagactaaagaaa
gaaagagatgaagctagatcactacttgctcaggctgagagacacataccatcatcaaca
ccaattacagtaaatgcctctgcagttagcaatggaagaacagttactcctgatgaagtg
ggacctggtggaaagaaaatctgtcccggaatatctgctagcatatttgatgagcttaca
gaatgtaatgctgctctctcacagcagcggaaaaagcggcagataccatcaacattggct
cctgttgatgatctagaaaggtatacccagatatctagtcatccacttcagaaaacaagc
aaaccaggcattgcatctattgatatacattataacaaggacatcattgcaactgggggt
tttgatacaaatgctgttatttttgatcgatcttcaggagaaatcttatctactcttagt
ggtcactcaaagaaggttacgagtgtaaaatttgtagcacgtgatgacttattcttgagc
agttcagcagacaagacagtgcggatatggcaagggtcagatgatggaaactataattgc
aaccacgttttgaaagatcataatgctgaggtgcaagcagttacagttcatgccacaaat
aattatttcgtgactgcttctcttgacaacacatggtgcttttatgagctttcttctgga
ttgtgcctcactcaggtggaggactctacaggatcagatggtggctacacatccgcagca
tttcatcctgatggtcttatcctcggaacaggaacctcagaagctcttgttaaaatttgg
gatgtgaaaagtcagacgaatgttgccagatttgatggacatgttggagcagtaactgct
atatctttctctgaaaatggttacttccttgcgactgcagcaagtgatggtgttaagctc
tgggatttacgtaaattgaggaacttcaggacatttgctccttatggttcagagacgcca
acaagctctgttgaatttgaccatagtggaagttaccttgcacttgcgggtgctgatata
agagtttaccaggttgccaatgttaaatcagaatggaactgtatcaaaactttccctgat
ttgtctggcacaggtaaagcaacttgtgtaaaatttggtccggatgcgaagtaccttgca
gttggatcaatggaccgaaacctccggatttttggcctaccaggggatagcgaagcaatg
gagtcttaa
DBGET
integrated database retrieval system
