Humulus lupulus (common hop): 133822258
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Entry
133822258 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133822258
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
hlp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133822258
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133822258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133822258
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
133822258
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
133822258
NCBI-ProteinID:
XP_062110515
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All DBs
Position
3:18840753..18844288
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AA seq
648 aa
AA seq
DB search
MSEEQMDFEDEDYGGPQKLQDQGSSGAISALADEEPMGEDDEYDDLYNDVNIGDGFMQLH
RSEAPLPPGGVSNGGLQAQKTNIPVPRDETGVSRELNIPGVSADGKYSSASSQFPGQKEG
LAVDNKSKVGFSEKGRIMEMTNDAQVRQMGFQRSLMPHGTGVDSSVIPVKVANEHVLSLN
SESIVTRGGPPMLANQTNVDASVNRSVVNENLIRPPIENGSAMLFVGELHWWTTDAELEN
VLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSSAATACKEGMHGHFFNGRACVVAFATS
QTLKQMGAAYASKNQAQNQSQPPQGRRPVNDGVGRGGNQSHQSGDTGGRNFGRGGWGRGG
QGINRGGGGSMRGRGGAMSAKNMVGSNAGIGGNAGGAGGYGQGLGGHAFGGPAGGMMNPQ
GMMGSGFDPSYMGRGGGYGGFPGPAFPGMLSSFPAVNAMGLAAVAPHVNPAFFGRGMANN
GMGMMGTHFMDGHHAGMWNDTSMGGWGGDEQGRRTRESSYGGEDGASEYGYGEANNEKGV
RSSVASRERERGSDRDRLGNSERRHHEERDQDWNKSEKEQREHGYREEKDGHSRDHRQRE
RDLDNEDDWDRGQSSSRPRSRSRVMPEDHQRPRSRDVDYGKRRRMPSE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagagcaaatggatttcgaagatgaggattatggaggaccgcaaaagctccag
gatcagggtagtagtggagctatatctgctcttgcagatgaagaaccaatgggagaagat
gatgaatacgatgatctctataatgatgttaacattggagatggtttcatgcagttgcac
cggtctgaggcaccacttcctcctggtggtgtcagcaatggagggctccaagctcagaaa
actaatattcccgtaccaagagacgaaactggggtctctcgagaactgaatattccaggt
gtttcagcagatggaaaatattctagtgcaagttctcaatttcctggccagaaggaggga
cttgcagttgataataaatcaaaagttggattttcagaaaagggaagaattatggagatg
actaatgatgctcaagtcagacaaatgggttttcaaagatctttgatgccacatggtaca
ggagttgattcatctgttattcctgtaaaagttgcaaatgagcatgtattgtcactgaat
tctgaaagcattgttactagagggggtcctccgatgcttgctaatcaaaccaatgtggat
gcaagtgttaaccggtctgtggttaatgaaaatctgataaggccaccaatagagaatggt
tcagctatgctgtttgttggagaactgcattggtggacaactgatgctgaacttgaaaat
gttttatctcaatatggaagagtcaaggaaattaagttttttgatgaaagagccagcggt
aaatcaaaaggatattgtcaagttgagttttatgattcatcagcagctactgcatgcaag
gaaggaatgcacggtcactttttcaatgggagagcttgtgttgtggcatttgctacttca
caaacacttaagcagatgggagctgcttatgcaagcaagaatcaagcccagaatcagtct
caaccaccccagggaagaaggcctgtcaatgatggtgttggaagaggaggcaatcagagc
catcaaagtggagatactggtgggaggaattttggaaggggtggatggggacgaggtggg
caaggaataaacagagggggtggagggtcaatgaggggaaggggaggggcaatgagtgct
aagaacatggttgggagcaatgctggaattggaggtaatgctggtggagcaggtggatat
gggcagggtcttggaggacatgcatttggtggtcctgctggtgggatgatgaatccacag
ggcatgatgggttctgggtttgatccgtcatatatgggtagaggaggtggttatggagga
tttccaggacctgctttccctggaatgctttcttcatttccagcagttaatgcaatggga
ctagctgcggtggctccacatgtaaacccagccttctttggcaggggtatggcaaataat
ggaatgggtatgatgggtactcatttcatggatgggcatcatgcagggatgtggaatgac
acaagcatgggtggatggggaggagatgaacaaggtcgaaggaccagggaatcaagctat
ggtggtgaggatggtgcttctgagtatgggtatggagaagcaaacaatgaaaaaggagta
agatcaagtgttgcttccagggaaagagaaagaggatctgaccgtgaccggttagggaac
tctgagcggaggcatcatgaagaaagagaccaggactggaacaaatctgaaaaggagcag
cgggagcatggatacagggaagaaaaagatgggcacagccgagatcatcgtcaaagagag
cgtgacttggataatgaggatgattgggacagagggcaatcttcatctagacctcggagc
aggtccagagtgatgcctgaagatcatcaacgccctcgctcaagagatgttgattatgga
aagaggagacgtatgccatccgagtaa
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