Humulus lupulus (common hop): 133822547
Help
Entry
133822547 CDS
T11341
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133822547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133822547
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133822547
Spliceosome [BR:
hlp03041
]
Complex C
Other components
Step II factors
133822547
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
ABC_tran
nSTAND3
AAA_16
Sigma54_activ_2
TsaE
Flavi_DEAD
PhoH
nSTAND_NTPase5
T2SSE
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
133822547
NCBI-ProteinID:
XP_062110900
LinkDB
All DBs
Position
3:38951232..38955962
Genome browser
AA seq
1196 aa
AA seq
DB search
MAILDEGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITELGRNCETVDEFDAKLKENG
AEMPDYFVRTLLTIIHAILPPKSNSDKGSKEDNGSDGNKGKFQALAIADDRDRVKELQKE
IEMEARERHRGEHGEEQDEDRRRGRDRDRDRDRDKYRGRDRDHHRDKDRDNRDRRRDKYN
GDGRGRDKDDDDGDDRGRHRDCHDKHRRDGYEDNAEFRERGDDRRGSKDSRNRQFQSDEP
ELYKVYKGRVSRVMETGFFVQLSDLRGKEGLVHVSQIASRRIANAKEVVKRDQEVYVKVI
SISGQKLSLSMRDVDQDTGKDLLPLKKSLEDDAFRANPSGSKEGAVTRTGLSGIRIVEEN
DIVTTRRPLKRMSSPEKWEAKQLIASGVLGVSEYPMYDEEGGDGMLYQEEGGEEELEIEL
NEDEPEFLQGQSRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSI
PKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKTISFGQRSKLSIQEQR
QSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVA
AMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILIDENLSQYSVI
MLDEAHERTIHTDVLFGLLKQLVQRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTF
PVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGK
NVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQ
NVYNPKQGLDSLIITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQR
INLGSTTLNMKAMGINDLLSFDFMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAE
FPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDH
LTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVVSAGKNFTK
IRKAITAGFFFHAGRKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYM
REVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggctatcttggacgagggtctgaagaagcttgagtatttgtccctggtctccaaggtc
tgctcggagcttgagactcacttagggtttggggacaaagttcttgctgagtttattacc
gagttgggtcgaaattgcgaaactgtggatgaatttgatgccaaattgaaggaaaatggt
gccgaaatgccagattattttgtccgtacgctgctaactatcattcacgcaattcttcct
ccgaagtccaactctgataagggttcgaaggaagataatggttctgatggtaataagggc
aagtttcaagccttggccatagctgatgacagggatagagtgaaagagcttcagaaggag
attgaaatggaagcccgagagaggcatagaggagaacatggtgaggagcaagatgaagat
agacgcagaggtagagatcgagatcgtgatagagatagagataaatatagaggcagagat
cgtgatcatcatcgagataaggacagagacaacagagatagacgcagggataaatacaac
ggggatggaaggggtagggacaaggatgatgatgatggtgatgatagaggaaggcataga
gattgtcacgacaagcatagaagagatggttatgaagataatgcagagtttagggagcgt
ggtgatgataggcgaggcagtaaggattcaaggaataggcagttccaatctgatgagccg
gagctttataaggtttataagggaagggtgtcaagagtgatggaaactgggttctttgtt
caattgagtgacttgaggggtaaggagggtttggtccatgtttcacagattgcaagtagg
cgaattgctaatgccaaggaagttgtgaagagggatcaagaggtatatgtgaaagtgatt
tcgatttcaggtcaaaagttgagcctttcaatgagggatgttgatcaggatacagggaag
gatttgctccccttgaagaagagcctggaggatgatgcttttagagcaaatccgtcaggg
tctaaggagggggccgtgactaggactggtctttctgggattaggattgtggaagagaat
gatattgtaacaactcgtcgaccattaaagagaatgagctctccagagaaatgggaagct
aagcagttgatagcctctggtgttttgggtgttagcgagtatcctatgtacgatgaggaa
ggaggagatggaatgctatatcaagaagagggtggggaggaagagcttgagattgagttg
aatgaggatgaaccagaatttttgcaaggacaaagtaggtattctgttgatatgtcacct
gtgaaaatttttaagaatccagaaggatcattgagtcgggcagctgcacttcagtctgca
cttattaaggagcgtagagaagtaagggagcagcagcaacgaactatgctggattccatt
cccaaggatctgaatcgtccgtgggaagatccaatgccagagactggtgaaaggcatctt
gctcaagagcttcggggtgttggcttgtcagcctatgatatgcctgagtggaagaaggat
gcttttggtaaaaccatcagttttgggcagagatcaaaactctcaattcaggagcaaagg
caaagccttccaatctacaagctaaaaaaagaactggttcaggcagttcatgataatcaa
gttttggttgtcattggtgagactggctctggcaaaacaactcaggttacacaatatctt
gctgaagctggttacacaactaggggtaaaattgggtgcactcaaccccgtagggtagct
gccatgtctgtggccaaaagggtagctgaagagtttggttgtaggttgggtgaggaagtt
gggtatgcaattcgtttcgaggattgtactggaccagagacagtcatcaagtacatgact
gatggtatgcttctaagggagattttgatcgacgagaatctttctcagtactctgtgatc
atgcttgatgaagctcacgagaggacaattcatactgatgttctctttggattactaaaa
caacttgtgcagcggaggccagaccttcgtttgattgtcacctctgccactttggatgct
gagaaattttcaggatatttctttaactgtaacatcttcaccatccctggtcgaactttt
cctgttgagatactctacaccaaacaaccagagagtgattacctagatgcttctcttatc
acagtgttacaaatccacttgacggaacccgaaggtgatattcttctctttttgactgga
caagaggagattgactttgcctgccagtctctttatgagagaatgaaaggtttaggtaaa
aatgttccagaattgattattctacctgtgtatagtgcccttcctagtgaaatgcaatca
aggatatttgatcctgctcctcctgggaagaggaaagtggttgttgctactaacattgct
gaggcatcattgactattgatggtatatactatgttattgatcctggatttgcaaagcaa
aatgtgtacaatccaaagcaagggttagactcactgatcataacaccgatttcacaagca
tcagccaagcaacgagctggccgtgctggtcgtacaggccctggaaaatgttaccgcctt
tacactgaaagtgcataccgtaatgagatgtctcctacttcaattcctgaaattcagagg
ataaatcttggatcaactacacttaatatgaaagcaatgggtataaatgatcttttatct
tttgattttatggacccccctgcgccccaagctctcatttctgccatggagcagttgtac
agtttaggagcactggatgaagaggggcttcttactaaattgggaaggaaaatggctgag
tttcctcttgagccaccattatctaagatgttattggccagtgtggaccttggatgtagt
gatgagatcttgactatcattgctatgattcagacaggaaacatcttttataggcctcgt
gaaaaacaagcccaagcagatcagaagagggccaagtttttccaaccagaaggagatcac
ctgaccttacttgccgtctatgaggcttggaaagctaagaacttttctgggccatggtgt
tttgagaattttgttcagtctcgttccttgaggagagcacaggatgtcagaaaacaactc
cttaccatcatggacaagtataaattggacgttgtgagtgcaggaaagaatttcacaaaa
atcagaaaagcaattacagcaggatttttcttccatgcgggtagaaaggatccacaggag
ggttacagaactctggttgagaatcagcctgtgtatatccacccgagcagcgctcttttt
cagcgacaaccggattgggtcatttaccatgagcttgttatgactacaaaagagtacatg
cgtgaggtcacagttatagacccaaaatggctagttgaattggctccaagattcttcaaa
gtagccgatcctacaaagatgagtaagcgcaaacgccaagaacgtattgaaccactctac
gatagataccacgagcctaactcatggcgattaagtaaaaggcgcgcttga
DBGET
integrated database retrieval system
