Humulus lupulus (common hop): 133822953
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Entry
133822953 CDS
T11341
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133822953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133822953
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133822953
Spliceosome [BR:
hlp03041
]
Complex C
Other components
Step II factors
133822953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
PhoH
nSTAND_NTPase5
SLFN-g3_helicase
ABC_tran
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
133822953
NCBI-ProteinID:
XP_062111413
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All DBs
Position
3:complement(89924307..89930776)
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AA seq
713 aa
AA seq
DB search
MAPGNLNNTTPNGNSANDNRKVDTFARRQKLLQHRKSLPIAIVERRLIDEVRKNDILIIV
GETGSGKTTQIPQFLFNAGFCKEGKSIGITQPRRVAAVTVAKRVAEECGVELGQRVGYSI
RFEDVTSSSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVQSDVLLGLLKNVQI
ARSKSNGHLNTETNKPKNGTMLEKENDVQSSIFLKHDQGKKFPPLKLIVMSASLDARVFS
DYFGGAKAVHVHGRQFPVEILYTFHPEPDYLDATLITVFQIHLEEALGDILVFLTGQEEI
ESVEILIKERVLQLPENNKKLVTVPIFSSLPSEQQMRVFAPTPAGYRKVILATNIAETSV
TIPGIKYVIDPGLVKARSYDPKQGLESLTVVPISKAQALQRSGRAGREGAGKCFRLYPES
EFEKLENSTKPEIKRCNLANVILQLKALGVDDIIGFDFIEKPSRSAIVKSLEQLFLLGAL
TDECKLSDPVGRQMSKLPLDPVYSKALIIASEFKCLQEMLITVAMLSVESIFYAPRDKLD
EARAAMKCFSSPEGDHLTLINVFGAANEFLEKKNLTCGKEKADKILRKWCKENFINSRSL
RHARDIHNQIREHVQQMGLHIVSCGDDVLNFRRCLAASFFLNAALKQPEGTYRALASGQM
VQIHPSSVLFQKKPECLIYNELIQTNHKYIHKITRIDYLWLTELAPQFYSMQS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggctccagggaaccttaacaacaccacaccaaatggcaactctgctaatgacaatcga
aaagtcgatacctttgctaggagacaaaaattgttgcagcatagaaagtctcttcctatt
gctattgtcgagcgacgactcatagatgaggttcggaagaatgatattttgatcattgtt
ggtgaaactggaagtggaaaaacaacccaaatacctcagtttctgttcaatgctggattt
tgtaaagaagggaaatctattgggataactcaacctaggcgtgttgctgctgttaccgtt
gcgaaaagggttgccgaggaatgtggtgtggagttgggtcaaagggttggatactcaatt
agatttgaggatgtgacttctagttcaacaaggatcaagtacatgactgatgggttactg
ttgagggaagcattgttggatccatatctcagtagatattcagttataattgttgatgaa
gctcatgagagaactgtccagagtgatgtgttactaggacttctaaaaaatgttcaaatt
gcacggtcaaaatcaaatggccatctaaatactgaaacaaataagccaaagaatggcacg
atgttggagaaagaaaatgatgttcagtcttcaatttttctcaagcatgaccaaggaaag
aaattccctccgctgaagttgattgtcatgtctgccagtttggatgcacgtgtcttctct
gattactttggtggtgcaaaagctgttcatgtccacgggcgacagtttccggtggagata
ttatatacatttcatccagaaccagattatttagatgccaccttaattactgtgttccag
attcatctggaggaggcccttggtgatatacttgtatttttgactgggcaagaagagatt
gaatccgttgaaatacttatcaaagagcgagttctacagttacctgaaaacaataaaaaa
ctagtaactgttccaatattttcatctcttccatcagaacagcagatgcgagttttcgca
ccaactccagctgggtatcgtaaggtgatactggctacaaatattgctgagacatccgta
actattcctggaattaagtatgttatagatccaggattggtgaaagcacgctcgtatgat
ccaaagcaaggattggaatctttgactgttgtaccgatttcaaaggcacaggctcttcaa
aggagtggacgtgctgggcgagaaggggctggaaagtgtttccgtctttacccagagagt
gaatttgagaaacttgagaactcaacaaagccagagatcaagagatgcaaccttgctaat
gtcattttgcaactcaaggctctgggtgtggatgatatcatcgggttcgactttatagaa
aaaccttcaaggtcagctattgtcaaatcattggagcagttgttcttgctaggtgcttta
acagatgaatgtaaactctcagatccagttggtcgtcaaatgtcaaaacttcctttagat
cctgtttattcaaaagctcttatcatagccagtgagttcaagtgcttgcaagaaatgttg
ataaccgttgcaatgctttcggtggaatctatattttacgctccccgtgataagttagat
gaggcaagagctgcaatgaaatgcttttcaagccctgagggagatcacctcactttgatt
aatgtatttggagcagctaacgagtttctggagaagaagaacttgacctgtggtaaagag
aaagctgacaagatcctaagaaaatggtgcaaggaaaactttatcaatagtcgctcccta
agacatgctcgtgatattcacaaccaaatacgagaacatgttcagcaaatgggtcttcat
attgtctcttgtggagatgacgtactaaacttccgcagatgtcttgctgcttcatttttt
ctcaatgcagctctaaagcaacctgagggaacatatagggctttggcaagtggtcagatg
gtgcagatccacccttcatctgtgttattccagaaaaaaccggaatgcttaatttacaac
gaactaatccaaactaaccacaagtatatccacaaaataaccagaattgactacttgtgg
ttaactgaactggctccccaattttattccatgcagagttga
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