Humulus lupulus (common hop): 133823460
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Entry
133823460 CDS
T11341
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133823460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hlp03036
]
133823460
Chromosome and associated proteins [BR:
hlp03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
133823460
SWR1 complex
133823460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
133823460
NCBI-ProteinID:
XP_062112220
LinkDB
All DBs
Position
3:229761706..229776243
Genome browser
AA seq
2081 aa
AA seq
DB search
MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLSQA
KKVALRASKGMLDQATRGEKKLKEEEQRLKKVALNISKDVKKFWLKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVDNYKPVQQNPTQDQHKEDDGDDPNESSELN
VEPPSDTADVDDDYDIQSDDESEDDEQTIEEDEALITKEERQEELVALQNEIDLPLEELL
KRYAGEEKACGDSMESSPVKDDGDEPAQMEDSHSNENELSTAIKIEKSNSVVSTGRRCQS
ESNGSHLVLENHLSEVETCEAKNLAEVSEDLGEEEVPYDFNDEREDGDFVLGITEEKDDE
TTLSEEEEFAKTDSHDPIDEIALLQKESEIPIEELLSRYKKDPINDEDGDDRSEYASALS
EGFADSLLLEDVEKKQLVVSIDENIEQKQGDENSEQKQSVSVVEEAESDGHPPPVHSIME
EQQAKHDTLSEGGKESEDIIADAAAAARSAQPTGNTFSTTKVRTKFPFLLKFPLREYQHI
GLDWLVAMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWET
EFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLI
LDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFK
DWFCNPIAGMVEGQEKVNKEVIDRLHNVLRPFILRRLKRDVEKQLPMKLEHVIYCRLSKR
QRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDIQ
LCSSVCSALSCGPLSRVDLRDMGFVFTHHCYRMTSWESDEVKALATPSNLIKARGDLLNL
EKIVSGSENRKLLGSNIFEDIQRAIMEERIKEAKDRAATIAWWNSLRCERKPMYSTTLRE
LVTVRHPAHDIHCHKANPRSYTYSRKLADIILSPVERFHKMLDLVESFMFAIPAARAPPP
VCWCSKSGSSAFLQSTYKQKCTKIFSPLLTPLRPAIVRRQVYFPDRRLIQFDCGKLQELA
ILLRKLKSGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNP
KIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISE
STIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRSLPIKNVQKERNYNG
NEISLSNADVEAALKHAEDEADYMALKKVEQEEEVENEEFTEETIGRLEDDELVNEDDVR
VDEPADHSGWMISSNKENVSMQNRSDTNEEKVLTVVVKEDDVDMLDDVKQMAAAAAAAGQ
AISSFENHLRPIDRYAIRFLELWDPIIDKATVESQVGYEETEWELDRIEKYKEEMEAEID
EDEEPLVYERWDSDFATEAYRQQVEALAQHQLMEDLECEAREREDEEAENRDSMNRNDMP
SDLKPKAKKKPKKAKFKSLKKGSLASGSKSVKEEPSADAMSMDEDTFSQEMLTFSDAASP
HSVMKKKRKKVEITINGSEEKTSKKKSKKLKRSTVEICSLDLDTDFPVVQHDGLTDSKPA
ESVVESEQRPLNRSKMGGKISITSMPLKRVLMIKPEKLKKGNVWSRDCVPSPDVWLPMED
AILCAVVHEYGPYWNLVSDILYSMTAGGFHRGRYRHPVHCCERFRELIQRYILSSSDNPN
HEKVSNAGSGKALLKVTEENIRTLLDIAAEQPDPELLLQKHFTALLSTVWKMNSRVDRLK
NLASSRNSVFSGGKKFSSGNQISHTSVREPGERLKFIILGKSSRIVAAALDNVDSRKQDD
KASPSNHSRDISANTERLDITLEFQGEMGDTLASLPSILNLTIIGSDPLSFVSKDEGVDH
LRTSIHVAENRSRAATRACLEDRLGWASSAFPTNDIRPRSAAKLPSLGKHKLPFPDLNKP
SKSKFKKSAENGELRHLPGEQNILQPLPTMASPIDLNLFSPSSPLSTDIQIDDLEINSLT
DMDKLTPLEEDGFETVEHNYVPDFITGLDDCTLFPEFTDIG
NT seq
6246 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaggtccaaggtctaagcttgatcatgaatcaagagctaagcgccaaaag
gcacttgaagctccgcgagaacctcgtaggcctaaaacacattgggatcatgttttagag
gaaatggtttggctttcaaaggactttgaatctgagagaaaatggaaattgtctcaagca
aagaaagtcgctttaagagccagtaaaggcatgcttgatcaggctacaagaggagaaaag
aaattgaaggaggaagagcagcggttaaaaaaagttgcactcaacatttcgaaggatgta
aagaaattctggctgaaaattgaaaaattggtactctataagcatcagatggagcttgat
gagaaaaagaaaaaggctcttgataagcagcttgagtttcttttgggtcaaactgagagg
tactcaacaatgttagcagaaaatcttgttgacaattacaagcctgtgcagcaaaatcct
acacaggatcaacacaaagaagacgatggagatgaccctaatgagtcttcagaactgaat
gttgaacctccatcagatacagcagatgttgatgatgattatgatatacaatctgatgat
gaatccgaagatgatgaacagacaattgaggaagatgaggctcttataactaaagaagaa
aggcaggaggagctggtcgctttgcaaaatgaaatagatcttcctcttgaggagctactg
aaacgttatgctggggaggaaaaagcatgtggagatagcatggagagtagtccagtaaag
gatgatggggatgaaccagcccagatggaagatagtcacagcaatgaaaatgaactttct
acagccataaagattgagaaaagcaactccgttgtatccactggtcgtcgttgtcagagc
gaaagtaatggaagccatttagttttggaaaaccatctatcagaagttgagacatgtgaa
gccaaaaatcttgcagaagtttctgaggacttaggggaagaagaggtgccatatgatttt
aatgatgaacgggaagatggtgattttgttctcggtatcacagaagaaaaggatgatgag
acaaccttgtcagaagaggaggaatttgctaaaacagattcccatgatcctatagatgag
attgccctgctgcaaaaggagagtgaaattcccatagaagaactgctttcaaggtataaa
aaggaccctatcaacgatgaagatggggatgatagatctgagtatgcctctgctttgtca
gagggctttgcagattctcttttacttgaagatgttgaaaagaagcaactggttgtttct
attgatgaaaacattgaacagaagcagggtgatgaaaactctgaacagaagcagagtgtt
tctgtggttgaagaagctgaatctgatggacaccccccacccgtgcattctatcatggaa
gaacagcaagccaaacatgatactttatctgaaggaggaaaggaaagtgaggatataatt
gccgatgcagctgctgctgcaagatcagcacaaccaacaggaaataccttctccacaaca
aaagtacggaccaagtttccttttcttctaaaattccctcttcgggagtatcaacatatt
ggcttggattggcttgttgcaatgtatgaaaaaaggctgaatgggattcttgctgatgag
atggggcttggaaagacaattatgactattgctttgttggcacacctagcatgtgagaag
ggaatatggggtccacatcttattgtggttccaacaagtgtaatgctgaattgggaaact
gagtttcttaaatggtgtcctgcttttaagattttgacatattttggaagtgcaaaagag
cgaaaattgaagaggcaaggctggttaaagcccaactcatttcatgtatgtataacaact
tacaggctggttattcaagattctaaagtgttcaagcgtaaaaaatggaagtacttgata
ttagatgaagctcatctgattaaaaattggaagtcacagagatggcagacacttttgaac
ttcaactcaaaacggcgtattctattaactggtactccacttcagaatgatctcatggaa
ctctggtcactaatgcatttcttgatgcctcacatttttcagtctcaccaggaattcaaa
gactggttttgtaatccaatagcagggatggttgagggacaagaaaaagtaaacaaagaa
gtgattgatcgtctgcacaacgtcctccgtccatttatactacgtcgtttgaaacgagat
gtggagaagcagcttcctatgaaacttgagcatgtaatatactgtagactctccaaaagg
cagcgtaacttgtatgaagactttatcgctagttcagaaacacaagctactcttgcaaat
gcaaatttttttgggatgattagcatcataatgcaactacgtaaagtatgcaatcatcct
gacttatttgaaggtcgtccaattgtcagttctttcgatatggctggtattgacattcaa
ctgtgttcttctgtttgctcagcactttcatgtggaccattgtctagagttgatctcagg
gacatgggttttgtgtttactcatcattgttatagaatgacttcttgggagagtgatgaa
gttaaagctcttgctaccccctcaaatttaataaaagcacgtggcgatctgcttaacctc
gaaaagattgtgtctggatctgaaaatcgaaaattgcttggatcaaatatttttgaagat
atacagagggcaataatggaggagaggataaaagaagcaaaggatcgtgcagcaaccatt
gcatggtggaattctttgaggtgtgaaagaaaacccatgtactcaacgaccctaagggag
cttgtcacagtaaggcatcctgctcatgatattcattgtcataaggctaatcctcgctct
tatacgtattcgagaaagcttgctgacataatcttgtcacctgtggaacgctttcacaaa
atgcttgacctagttgaaagtttcatgtttgcaatcccagctgcacgggctccaccacct
gtttgctggtgtagtaaatctgggagttctgcttttcttcaatcaacttataagcagaag
tgcaccaaaatattctctccacttttgactcctttaaggcctgcaattgttcggaggcaa
gtttactttcctgacaggaggcttatacagtttgactgtggtaagttacaagagcttgca
attttgcttaggaaattaaagtcaggaggtcacagagcactaatattcactcagatgaca
aagatgctagatgttttggaggcttttataaatctgtatggttacacttatatgcgttta
gatggatccactccacccgaggagaggcaaactttgatgcaaaggtttaataccaatcca
aaaatattcctttttatcttatcaacacgtagtggaggagttggcatcaacctagttggg
gcagatacagttatcttttatgatagtgactggaatcctgctatggaccaacaagctcaa
gatcgatgccaccgaattggacagacacgtgaagttcatatttatcgattgattagtgag
agcaccattgaagagaatattttgaagaaagcaaatcagaagcgtgccctagatgatcta
gtgatacagagtgggggctacaacactgaattctttaaaaagcttgatcctatggaactg
ttttctggtcatagatcacttccaatcaagaatgttcagaaggagagaaattacaatgga
aatgaaatatctctgtctaatgcagatgttgaggctgctttaaaacacgcagaagatgaa
gctgattacatggcattgaagaaagttgaacaggaagaagaagttgagaatgaagagttc
acagaagaaaccattgggagactggaagatgatgaattagtaaatgaggatgatgtgagg
gttgatgagcctgcagatcatagtggctggatgatatcatcgaacaaagaaaatgtctcc
atgcagaataggagtgatactaatgaagaaaaagttcttacagtagttgttaaggaagat
gatgttgacatgttggatgatgttaaacaaatggctgccgcagctgcagcagcagggcaa
gcaatatcatcctttgagaatcatttgcgaccaatagataggtatgcaattcgctttcta
gaattatgggaccccattattgacaaggcaacagtggaatctcaagtagggtatgaggaa
acagaatgggagttggaccgcattgagaagtacaaggaggaaatggaagctgaaattgat
gaagatgaggaacctcttgtgtatgagagatgggattctgattttgcaactgaggcatat
cggcagcaggttgaagcactggctcaacatcagttgatggaggatctggaatgtgaggca
agggagagggaagatgaagaagctgaaaatcgtgactctatgaacaggaatgatatgcca
agtgatctgaaacctaaggctaaaaagaaaccaaagaaagccaagttcaaatccctaaag
aaaggatcactagcttctggatcgaaatctgtgaaagaagagccatcagcggatgctatg
tccatggatgaggacactttctctcaagagatgctcacattctcagatgcagcatctccg
cattcagtcatgaaaaaaaaacggaaaaaggttgaaattactataaatggtagtgaagag
aagacttcaaagaaaaagtccaagaaactcaagaggagtactgttgagatatgctctctt
gatttagatactgattttcctgttgtgcagcatgatggacttacagattcaaaacctgct
gaaagtgtagttgagtctgagcagagaccacttaacagaagcaagatgggaggaaaaata
tccatcacttccatgcccttaaagcgagttttaatgataaaaccagaaaagctaaagaag
gggaatgtttggtcaagggattgtgttccttctcctgatgtttggttgcctatggaggat
gctatattatgtgctgtggtacatgaatatggcccatattggaacttggttagtgacatc
ctatatagcatgactgctggtgggtttcataggggaagatatcgacatcctgtccattgt
tgcgagaggtttagagaactcatccaacggtatattttgtcttcttcagacaacccaaat
catgaaaaggtcagcaatgcaggatctggaaaggctcttctgaaagttaccgaggaaaac
attcgaacactgttagatattgctgctgagcagccagacccagaattgctccttcagaaa
cacttcactgcattgctgtcgactgtctggaagatgaactctcgtgttgatcgcctaaag
aatcttgcatcatcacgaaatagtgtcttctctggtggaaaaaaattcagttcaggcaac
cagatttctcatacttctgttagggaacctggagaaagactaaaatttatcattttggga
aagagtagtaggatagtggcagctgcacttgataatgttgatagtagaaaacaggatgac
aaagcatctccttctaatcatagtagagatatatcagcaaatactgaacggctggatata
actctggaattccaaggagaaatgggtgatacattggcttctctgccttctattctgaac
ttaacaataattggttctgaccctctttcctttgtaagcaaagatgagggggtagatcat
ctcagaacttctattcatgtggctgagaaccgttccagggctgctacaagagcttgtctt
gaagacagacttgggtgggcttcgtctgcattcccaacaaatgacattagacctcgttcc
gcagcaaaattaccgtccttgggaaagcacaagctcccattccctgatttgaacaaacct
tccaagtcaaaattcaagaaatcagctgagaatggtgagttacgccaccttcctggggag
cagaatattctccaaccattgccaaccatggcatcaccaattgatctcaacctattcagt
ccgagctcacccttaagtacagatattcagattgatgatctggaaattaattccttaact
gatatggataagttaactcctttagaagaggatggttttgaaacagttgaacacaattat
gttcctgactttatcactggtcttgatgactgtacattatttccggaattcacggacatt
ggttag
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integrated database retrieval system
