Humulus lupulus (common hop): 133823497
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Entry
133823497 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133823497
KO
K12830
splicing factor 3B subunit 3
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133823497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlp03021
]
133823497
03041 Spliceosome [BR:
hlp03041
]
133823497
03036 Chromosome and associated proteins [BR:
hlp03036
]
133823497
Transcription machinery [BR:
hlp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133823497
Spliceosome [BR:
hlp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133823497
Complex B
133823497
Complex C
U2 SnRNP specific factors
133823497
Chromosome and associated proteins [BR:
hlp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133823497
TFTC complex
133823497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
133823497
NCBI-ProteinID:
XP_062112286
LinkDB
All DBs
Position
3:complement(237636020..237649308)
Genome browser
AA seq
1395 aa
AA seq
DB search
MALSEEECSSAKSRSSSSAASSSSNHYLAKCVLRGSIVLQVVYGRIRSPTSLDVVFGKET
SIELVVIGEDGIVQSVSEQPVFGTIKDLAVLPWKDKFSPQNPQMLGKDFLLVLSDSGKLS
VLSFCNEMHRFFPVTQVHLSNPGNLRDQLGRLLAVDSSGSFFAASAYEDQLAMFSVSVSA
GCDIIDKKIIYPPENGGDVSTARSIQKNNISGTIWGMCFISKDPYQPSKGHNPVLAILLN
RRRALHNHNELLLLEWNIRDDDVSVLSQYVEDDLLAYDIVEVPHSYGYAIMFRVGDALLM
DLRDAHTPCCVYRTNLNFLPHALEEQNFAEESSRAQHDVDDEGIFNDAASALLKLRDDPM
CIDSDTDNSNVKISYNSNVKISYKHACSWSWEPGNTKNPRMIFCLDTGEFFFIQLGFDLG
GLRVTQSDCLYKGLQSNALLWVEGGFLAALVEMGDGMVLKLEDEKLIYSSPIQNIAPVLD
MSIVDYHDEKHDQIFSCCGVVPEGSLRIIQSGISVEKLLRTAPIYQGITGTWTVRMKVTD
LYHSFLVLSFVEETRVLSVGLSFTDVTDSVGFQPDVCTLACGLLNDGLLIQIHQHAVRLC
LPTKVAHCEGVSFPSPVCKSWFPENMNINLGAVGENLIVVSTSNPCLLFILGFRMTSEYN
YEIYEMQHLRLQYELSCISIPQKCFECKSTNHPMDVGDESCVASLSSKVDISKSFVVGTH
KPSVEVLFFDPDDGLRHLAIGTIALTNITGTTVSGCVPQDVRLVYVDRFYVLSGLRNGML
LRFEWPTSSTIPSSVSPNSSFSVNIDSDFSSMSASNSFGLQHNYVELSEKRVSGVPIDLQ
LIAVRRIGITPVFLIPLSDSLNADIISLSDRPWLLHAARHSLSYTSISFQSSTHVTPVCS
VDCPKGLLFVAENSLHLVEMIHSKRLNVQKFNLGGTPRKVLYHSESRLLLVMRTDLTTDS
CSSDICCVDPISGTIISSFKLEHGETGKSMQLVRAGNEQVLVIGTSLSSGPAIMPSGEAE
STKGRLIVLCLEHAQNSDSGSMTFCSKAGSSSQRASPFREVVAYTTEQLSSSSLCSSPDD
NSCDGIKLEDTEAWQLRLSYSVAWPGMALAICPYLERYFLASAGNIFYVCGFSNDNTRVK
KYAMGRTRFMITSLTAHFTRIAVGDCRDGVLFFSYQEDTKKLEQIYCDPSQRLVADCILM
DVDTAVVSDRKGSIAVLSCTDHVEDNASPECNLTVSCAYYMGEIAMSIKKGSFSYRLPAD
DVLNSGDLKIDSTHNTIIASTLLGSMITFIPLSREEYELLEAVQARLVIHPLTAPILGND
HNEFRRRENPTGVPNILDGDMLTQFLELTSMQQEAVLLFPLGSRDAVSSSMKSSSSPLPV
NQVVQLLERVHYALN
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcggaggaggaatgctcttccgccaaatcccgatcgtcatcttccgcggca
tcttccagcagcaatcactacctcgccaagtgcgtccttagaggaagcatcgttcttcag
gtcgtctatggtcgaatccgctctcctacctccctcgacgtcgttttcggcaaggagact
tctatagaactggttgtaataggcgaagatgggatagtgcaatctgtgagcgagcaacct
gtgtttggcaccattaaagaccttgccgttctaccctggaaagacaagttttcgccgcaa
aatccacagatgctaggtaaagattttttgctagttctttctgactctgggaagctctcg
gttctatctttttgtaatgaaatgcacagatttttcccagtgacgcaagttcacctttca
aatcctggaaacttaagggatcaacttggaaggttgcttgctgttgattccagtggatct
ttctttgctgcaagtgcctatgaagatcaattggctatgttctctgtttcagtatctgca
ggctgtgatatcattgataagaaaataatttatccacctgaaaatggaggagatgtaagc
acagctagaagcattcaaaagaacaatataagtggtaccatatggggaatgtgctttatt
tcaaaagatccttatcagccaagtaaggggcataatcctgtacttgccattcttttgaat
aggagaagagcactccataaccataatgaacttctgttattggaatggaacattagagat
gatgatgtttctgtgttatcacaatatgtcgaagatgatcttttggcatatgacattgtt
gaagttcctcattcctatggatatgccatcatgttcagggtgggtgatgctctcttaatg
gatcttagagatgctcatacaccctgttgtgtctatcgaacaaacttaaattttttaccc
catgcacttgaggagcagaattttgctgaagagtcaagcagggcacaacatgatgttgac
gatgaaggtatatttaatgatgctgcctctgctttgctaaagctccgggatgatcctatg
tgcatagatagtgacactgacaatagcaatgtaaaaattagctacaatagcaatgtgaag
attagctacaaacatgcatgttcgtggagttgggaaccaggaaatactaaaaatccgaga
atgattttttgtctagatactggagaatttttttttattcaacttggctttgatttaggt
ggtcttagggttactcaatctgactgtctttacaaaggattacaatcaaatgcgctttta
tgggttgaaggtggttttcttgctgctcttgttgagatgggggatgggatggttctgaaa
ttggaagatgaaaagctgatttacagcagtcctattcaaaacattgctccagtactggat
atgtcaattgtagattaccatgatgagaaacatgatcaaattttttcctgctgtggggtg
gtgccagagggttcattaaggattattcaaagtggcattagtgtagaaaagctacttagg
acagctcctatatatcaaggcataaccggtacctggacagttcgaatgaaagttactgat
ttgtatcattcttttcttgttctgtcatttgttgaagagaccagggtattatcagttggt
ttaagctttactgatgtgactgattcagttggtttccaaccagatgtttgtactttggca
tgcggccttttgaatgatggattgctgatccagattcatcagcatgcagtaagactttgt
ttgcccaccaaagttgctcactgtgaaggagtttctttcccttctccagtttgtaagtca
tggttccctgaaaatatgaatatcaatttgggggctgttggagaaaatttaatagtcgtc
tctacttccaacccttgtcttctattcattcttgggttcagaatgacatcagaatataac
tatgaaatatatgaaatgcaacatctgagactgcaatatgagttatcatgcatttccatt
cctcaaaaatgttttgagtgcaaaagcacaaatcatcctatggacgttggagatgagagt
tgtgtggcttccctttcatctaaagttgacattagtaaatcttttgttgttggcacacat
aagccttcggtagaagttttgttttttgatccggatgacggcctaagacatcttgcaatt
ggaacaattgcacttacaaatattaccggaactactgtcagtggttgtgttcctcaagat
gtaaggcttgtatatgttgatcggttttatgtcctttctggactgagaaatgggatgctg
cttcgatttgagtggcccacttcctctacaattccatcatctgtatcacccaactcttct
ttttcagtgaatatagattctgatttttctagcatgtcagcatcaaatagttttggtttg
caacacaactatgttgaattatctgagaagagagtgagtggggttccgattgatcttcag
ttgattgccgttcgtcgcattggcattacccctgttttcctaattcccttgagtgactcg
cttaatgctgatataatttctctgagtgacagaccttggttgttgcatgctgcaaggcat
agtctctcgtatacatctatttcatttcaatcttcaacacatgtaactcctgtatgttct
gttgattgccctaagggtcttttgtttgtagcagagaacagtctacatttggtggagatg
attcatagtaagaggcttaatgtgcagaaattcaatcttggaggcactccacggaaggtc
ctatatcatagtgaaagcaggttattgcttgtgatgaggactgatttaacaactgattca
tgttcatctgatatatgttgtgtggatcctattagtgggacaataatctcatcttttaaa
cttgagcatggagaaacagggaaatccatgcagttagtaagggccgggaatgaacaggtc
cttgttatcggaactagtctatcttcaggtccagccataatgcccagtggtgaggctgaa
agtacgaagggccgtcttattgttctgtgtcttgaacatgcacaaaactcagatagtggt
tcaatgacattctgttcaaaggcagggtcatcttctcaaagggcttcaccatttcgtgaa
gttgttgcatatactacagaacagctatctagcagtagcctgtgcagtagcccagatgat
aacagttgtgatggaattaaacttgaggatactgaagcatggcagttacggttgtcatat
tcagttgcgtggcctggaatggcacttgcaatctgtccttatcttgagcgttattttttg
gcatctgctggtaatattttttatgtatgtgggttttcaaatgacaatacccgagtgaaa
aaatatgcgatggggaggacaaggtttatgattacatctctgaccgcacacttcacaaga
attgccgttggtgattgtcgcgatggagtcctctttttttcttatcaagaagataccaaa
aaactggagcaaatttactgtgatccatcccaaagactagttgctgattgtattctcatg
gatgttgatactgctgttgtgtcagatcgtaagggcagcattgctgtgctttcatgcaca
gatcacgtagaagataatgctagtccggagtgcaacttaacagtaagctgtgcctattat
atgggtgagatagctatgagcatcaagaagggatctttttcatacagacttccagcagat
gatgtgttgaacagcggtgatttgaagattgactctacacataacactattattgccagc
accctgttaggaagtatgataactttcattcctctgtcaagagaagaatacgaactcttg
gaagccgtccaagctagattagtgattcatccattaactgctcctattcttggaaatgat
cataatgagtttcgaagacgtgaaaacccgactggagtaccgaatatacttgatggtgat
atgcttactcaattcttggaacttacaagtatgcaacaagaagctgtattattgtttcct
cttggctcaagagatgctgtaagctcaagcatgaaatcatcgtcatcacctttacctgtc
aatcaggttgtacaacttctggagagagttcattatgctctaaactag
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integrated database retrieval system
