Humulus lupulus (common hop): 133824551
Help
Entry
133824551 CDS
T11341
Name
(RefSeq) uncharacterized protein LOC133824551
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133824551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133824551
03041 Spliceosome [BR:
hlp03041
]
133824551
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133824551
Spliceosome [BR:
hlp03041
]
Complex B
Other components
Prp19-related factors
133824551
Complex C
133824551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
ARM_TT21
NRDE-2
3HB_CusB
Motif
Other DBs
NCBI-GeneID:
133824551
NCBI-ProteinID:
XP_062113436
LinkDB
All DBs
Position
3:279104572..279111817
Genome browser
AA seq
916 aa
AA seq
DB search
MEISKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARADAPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSHYETLNNTFERALVTMHKMPRIWIMYLQTLTDQKLLTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
INSCLWQEGSERLASVLNDDQFYSIKGKTRHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAQFEESML
AHKMEVMDLSDDEGEEEGGVEENGDEEDEDVRLDLNLSVAEFEKKMLNGFWLHDDKDIDL
RLARLDHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMK
AVGKPHTLWIAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASIWCEWAEMELKHKNF
KGALELMRRATAEPSVEVKRKVAADGSEPVQMKLHKSLRLWTFYVDLEESLGTLESTREV
YERILDLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVK
RYGRTKLERARELFEHAIETTPADVVKPLYLQYAKLEEEYGLAKRAMKVYDQATKAVPNS
EKFSMYELYINRAAEIFGVPKTREIYEQAIESGLPDKDVKKMCSKYAELEKSLGEIDRAR
AIFVFASQFSDPRSDMDFWQEWNNFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYL
MQKDQTVDLDEAKDKLKQAGVPEDEMAALERQLAPAANDTIAKDGSRKVGFVSAGVQSQT
DEGLKVTANHEDIELPEENDSDEDNEIVEIKQKDVPDAVFGDLAHKRKEIEDDAQNKDDE
SRLGALERIKRLKKAA
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggagatctctaaagagctttatccctcccaagatgaccttctctacgaagaagagctt
ctgcgaaaccccttcagcctcaagctctggtggcgatacctaattgctcgtgccgacgcc
ccattcaagaagcgctttatcatttacgagcgcgccctcaaagcccttcccggaagctac
aaactttggtacgcttatctccgagaacggctcgagttggtccgtaacctacccatcact
cactcccactacgagaccttaaacaataccttcgagcgagccctcgtcaccatgcacaaa
atgcccagaatttggatcatgtacctccagactttgacggaccagaaattgctcactcgt
acccgccgcaccttcgatagagcactctgcgctttacccgtcacccagcacgaccgcatt
tgggagccctatctcgtttttgtgagccagaggggtatcccaattgagacttcgcttcgc
gtttatcgaaggtacttaaagtacgaccctagtcatattgaagatttcattgaattcttg
attaattcttgtctttggcaagaaggatctgagaggttagcttcggtgctgaatgatgac
cagttttactcaataaagggaaaaactagacacaggctttggttggagttgtgtgatttg
ctcactaagcacgctacggaggtttctgggttgaatgtggacgcaattataaggggtggg
attaggaagtttactgatgaggtgggtcgcctttggacctctcttgcagagtattacatt
aggagaaatttacatgagaaagctagagatatatttgaggagggtatgacgactgtggtt
actgttagagattttagtgtaatttttgattcttatgcccaatttgaagagagtatgctg
gctcataagatggaagttatggatttgagcgacgacgaaggagaggaagaaggtggtgta
gaagagaatggcgacgaagaggatgaagatgtgcggttggatttaaatttgtctgtggct
gaatttgagaagaagatgcttaatggtttttggctacacgatgataaggatatagattta
aggttagctagattagatcatctcatggatagaagacccgaattagctaatagtgttctt
ttacggcaaaatccgcataatgtggagcagtggcatcggagggtgaagctgtttgagggt
aatcctacaaaacagatccttacttacactgaggcggtgaggacggttgatcccatgaaa
gcagtggggaaacctcatacgttgtggattgcttttgccaagctgtatgagaaccataat
gatattgtaaatgcaagagtgatttttgacaaagcagtgcaggtgaactacaagaccgtg
gataatctagctagtatttggtgtgagtgggcagaaatggaattgaaacataaaaatttt
aaaggagcactggagcttatgaggcgtgctacagcagagccatcagtggaggttaaacga
aaagtggctgctgatggaagtgaaccagttcaaatgaagctgcataagtctttgagacta
tggactttttatgttgatttggaggagagccttggcactttggagtccactcgagaagtt
tatgaaaggatactggatttaagaatagccacaccacaaattataattaactatgcattt
ctgttggaagaaaataaatactttgaagatgcatttaaggtatatgaaagaggagtaaag
atattcaagtatccacatgtcaaagatatatgggtgacttatctaactaagtttgtgaag
agatatggacggacaaaattggaacgtgcaagagagctatttgaacatgctattgaaacg
acccctgctgatgtagtgaaacctctgtatcttcaatatgccaaactggaggaggaatat
ggtctggcaaagcgagctatgaaggtctatgaccaagctactaaggctgttccaaacagt
gaaaaatttagcatgtatgagctctacattaaccgtgcagctgagatctttggtgtcccc
aaaactagggaaatatacgaacaagcaatagaatctggtcttccagataaagatgtgaag
aaaatgtgttcaaagtatgccgagcttgagaagagcttgggagaaattgaccgtgctcgt
gcaatatttgtctttgcatcgcagttttcagatccacgatcagatatggatttctggcaa
gaatggaataattttgaagtgcaacatggtaacgaagatacctttagagaaatgctccgt
attaaacgaagtgtgtctgcaagttacagccagacgcactttattctgccagagtatttg
atgcagaaggatcaaactgtggaccttgatgaggcaaaagacaaattgaaacaggcaggg
gtccctgaagatgaaatggctgctctagagaggcagttagctcctgcagcaaacgatact
attgccaaagatggcagtaggaaagtgggattcgtgagtgccggagtgcaatcacaaact
gatgaagggttgaaagttacagcaaatcatgaagatattgagctaccagaagagaatgac
tctgatgaagacaatgaaattgttgaaattaagcaaaaagatgtgccggatgctgttttt
ggagacttggctcacaagagaaaagaaattgaagatgatgctcagaacaaggatgatgaa
agccgtcttggtgccctcgagagaataaagagactaaaaaaggcggcctga
DBGET
integrated database retrieval system
