Humulus lupulus (common hop): 133824609
Help
Entry
133824609 CDS
T11341
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133824609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133824609
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133824609
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133824609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
Motif
Other DBs
NCBI-GeneID:
133824609
NCBI-ProteinID:
XP_062113531
LinkDB
All DBs
Position
3:complement(280050609..280064867)
Genome browser
AA seq
894 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVCLSVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLG
QQPKTDPKEKAKAETRDWLNNVVSELESQIDNFEAEIEGLTVKKGKTRPPRLVHLEESIT
RHKAHIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLD
KVEALEELVIIGPSSLVKAAPILGLKSLTVPAIQIPATVSSTHQQTTSVQEPVEETASQE
STLDTVARTPPPKSSVMSSSAATTPAGSHTASAPVNIPSHNLSGVSIGSPNLQGSSSVRV
TDSTGATSSSPVSLSTSLKEEEIGSFPGRRSSPSFTDTGLVRGIGRGSLSSQPSSSIPLS
SGNVNPGNSTLGAVPSASDMAKRNILGADERLGSSGVGQPLVSPLSSRMILPQATKADGT
GSLDSSNVSDAAALAGRVFSPSVVSGMQWRPGSEPFRGRTEIAPDQREKFLQRLQQVQQQ
GHSNLLGMPTLAGGNHKQFSAQQQNPLLQQFNSQNSTVPPQAGLGLGVQTSGLGPVTSSS
LQQQTSSIHQPSNPSVLVSSGPKESELGHAKVDEHQQQNLPDDSAVDSTVASSGIAKNLM
NEDDMKAPYAVDSPTGVSGSLTEPAQMPRDIDLSPGQPLQANQSSGSLGVIGRRSVSDLG
AIGDNITGSTAMPGGMHDQSYNVQMLEAAYYKLPQPKDSERARSYNPRHPASTPPSYPQV
QAPIVNNPAFWERLGLEPYGTDTLFFSFYYQQNTHQQYLAAKELKKQSWRYHRKYNTWFQ
RHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgggggccagtcggaagcttcagggcgagatcgaccgtgttcttaagaaagttcaggaa
ggcgtcgatgtcttcgacagtatttggaataaggtttacgatacggataatgctaatcag
aaggaaaagtttgaggctgacttgaagaaggagattaagaagttacaaaggtatagagac
cagatcaagacttggattcagtccagtgagattaaggacaagaaggtctgtctgtctgtt
agtgcctcttatgagcaggctctcgtggatgctcgcaaacttattgagcgtgaaatggaa
agatttaagatatgtgaaaaggaaaccaaaacgaaagcattttctaaagaagggttggga
caacaacctaaaactgatccgaaagagaaggctaaagcagagacgagggattggttgaac
aatgtggtttctgagttagaatcgcagattgacaactttgaagctgaaattgaagggctc
actgttaagaaaggaaaaacaagaccacctagattggttcatttagaggaatctattact
cgacacaaggctcatattatgaagttagaactcatattgagactattggataatgatgaa
ttgagtcctgagcaggtcaatgatgttaaagacttcttggatgactatgtggagcgtaac
caggaggactttgatgagttcagtgatgtggatgagctttacagttcattaccattggac
aaggtggaggcacttgaagaacttgttataattgggccttctagtcttgttaaggctgcg
ccaattcttggattgaagtctttaacagtaccagcaattcaaatccctgccaccgtatct
tctactcatcagcaaactacttctgtccaagaaccagttgaagagacagcttcccaggag
agtacccttgatacagttgcaagaacaccacctcccaaaagtagtgtgatgagttcttcg
gctgcaactactccagcaggaagtcatacagcttctgcacctgtgaatattccatctcat
aatttgtctggtgtttcgattggttctccgaatctgcaaggttcaagttctgttcgggtt
actgacagtactggggctactagttcttctcctgtaagtttatctacttctttaaaggaa
gaggaaataggaagctttcctggtcgcagatcatctccatcttttacagatactggactt
gtaagaggcattggtagaggcagtctttcaagccaaccttcatctagcatcccacttagt
tctggtaatgtaaatcctggtaatagcacccttggtgctgttccatcagcatctgatatg
gctaagagaaacattctgggagctgatgagagacttgggagcagtggtgtggggcaacct
cttgtttcccctttaagtagtaggatgattttgcctcaagctacaaaggctgatggaaca
ggctcacttgattctagtaatgtcagtgatgctgcggctctagctggcagagttttttcc
ccatctgttgtctctggcatgcaatggaggccgggaagtgaaccatttcgtggaagaact
gaaatagcaccggatcagagggagaaatttctacagcggctccaacaagtgcagcaacaa
ggccacagtaacctacttggcatgccaacacttgctggaggaaatcataagcagttttca
gcacaacagcaaaatccactgttgcaacagtttaattctcaaaattcgactgtaccccct
caagctggtctgggacttggagtccagacttcaggtcttggtcctgttacttcttcctcc
ttgcagcagcagacaagttccatccaccaaccatctaatccatcagtgttggtatcaagt
ggcccaaaagaatctgaacttggccatgcaaaagttgatgaacaccaacagcagaattta
cctgatgattcagccgttgattctactgttgctagttctgggattgcaaagaatcttatg
aatgaggatgacatgaaagctccatatgcagttgattctccgacaggagtttctggctcc
ttaacagagccagctcagatgccaagagatattgatctctctcctgggcaacctttacag
gccaatcaatcttctggtagcttaggtgttattggtcgaagaagtgtttctgatctgggt
gccattggcgacaacattactgggtcaactgcaatgcccgggggaatgcatgaccaatca
tataacgttcagatgcttgaagctgcttattacaaacttccacaacccaaggactctgaa
cgtgcaaggagttataatccaaggcaccccgcaagtacccctccaagttaccctcaagta
caggcacctattgttaacaatccagcattctgggaacgattgggtcttgaaccatatgga
actgacaccctcttcttttcattttactatcaacagaatacacatcaacaatatttggcc
gcaaaagaattaaagaagcaatcatggcgataccacaggaagtacaacacatggtttcag
cgacacgaggaaccaaaagttgctacagatgaatatgaacaagggacatatgtctacttc
gatttccatattgccaatgatgatttacaacatggatggtgtcagcggatcaagacagag
ttcaccttcgagtataattatcttgaagatgagcttattgtatag
DBGET
integrated database retrieval system
