KEGG   Humulus lupulus (common hop): 133824701
Entry
133824701         CDS       T11341                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
hlp  Humulus lupulus (common hop)
Pathway
hlp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hlp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133824701
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hlp03021]
    133824701
Enzymes [BR:hlp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133824701
Transcription machinery [BR:hlp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133824701
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 133824701
NCBI-ProteinID: XP_062113652
LinkDB
Position
3:complement(281592454..281600140)
AA seq 1198 aa
MGASSDPKEDIAMSSKGEKFSNTSEMDIEDDDFDDDEFVNPASIKNLGADFLQKFCKEAS
VAFFNEYGLISHQINSYNDFIRSGVKRVFESFGVLTVEPGYDPSKKGEVWRYASVSFGEV
KLDRPTFWGGSAKDKEYNMLPRHARLQNMTYSSRISVTVHVEVYTQQSVSSDKFKTGSEQ
HLDRRVLSSDSKEVMIGKIPVMVKSDLCWMKEAEKDDCDFDHGGYFIVKGAEKTFIAQEQ
ICKKRLWITSNPFLTVAYQSEVKRNRLIIRLAPSQVEDAKPEKVLTVYFLSTEIPVWILF
FALGVSSDKEVVNLIDYPTDDASISNILFASINTADKACDGFRRPKAALTHVDKQIKKTL
FPPRESIEECLSMYMFPNLRSTQQKARFLGYMVKCLLQAATGRRKCNNKDDFRNKRLDLA
GELLERELRAHVSHARKRMAKALQRDLYGDRALRSIEFYLDASIVTNGLSRAFSTGAWCH
PFKRTERISGVVANVGRTNPLQTIVDMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLATP
DGENCGLVKNLATTGLVSLEVVESLVPKLCDSGMEKLVNDTSTPLDGNYKVFLNGDWIGV
CVDALAFVRRLRKMRRRKELPHQVEIKRDEKHGEIRIFSDAGRILRPLLVVENLSKITPS
KAGKYTFQSLLDRGIVELIGAEEEEDCRTAWGIKFLLMEDKGKPIEYTHCELDMSFLLSV
SCGIIPFANHDHARRVLYQSQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQKPLFRTIISD
CLGKQGYALNHDGFLPKNECFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR
SYKAEVDNKESLDKKGKPDECINFGKIPSKIGRVDSLDDDGLPFVGANLQSGDIVIGRCA
ESDVDHSIKLKHTEKGMVQKVVLSSNDAGKNFAVVSLRQVRTPILGDKFSSMHGQKGVLG
FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALAKGIPVRHATPFAT
PSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMSEDKVKFRNTG
PVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASANLHERLFTLSDSSQMHICQKCQNI
AYIIQRALAGGRKIRGPYCRICESADDIVKVNVPYGAKLLCQELFSMGIALKFETQIC
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgggggcgtcctcggatcccaaggaagatatagctatgagtagcaagggagaaaagttc
tcaaataccagtgaaatggatatagaggatgatgattttgatgatgacgagtttgtgaat
ccagcaagcataaaaaatctgggagctgattttttgcagaaattctgtaaggaggcttcg
gtagcattcttcaatgagtatggcctcatcagtcaccagataaactcgtacaatgacttc
atcagaagcggcgtaaagagggtttttgagtcgtttggtgtgcttacagttgagcctggc
tacgacccatcgaaaaagggagaggtttggcgatatgcctcagtgagttttggtgaggtt
aaacttgatcggccaaccttttggggtggttctgccaaagataaagagtacaatatgtta
ccgaggcacgcccgactacagaacatgacttattcatcaaggattagtgtgaccgtacat
gttgaggtatatactcaacaaagcgttagtagtgacaaattcaaaactggaagtgagcaa
cacctcgacaggagggttttaagttcggattctaaggaggtcatgattggaaagatcccg
gtgatggtaaagtctgacctttgttggatgaaggaggccgagaaagatgactgtgatttc
gatcacggtggctattttatagtcaagggtgcagagaagacatttattgctcaagagcag
atatgtaagaagagactttggataactagtaatccttttctgacagttgcataccaatct
gaagtaaagaggaataggttaattattaggttagcgccaagccaagttgaagatgctaaa
ccagagaaggttcttactgtttactttttgtcaactgagattcctgtatggattttgttc
tttgcccttggcgtgtcatctgataaggaagttgtgaatctcattgattatcccactgat
gatgctagcatttccaatatactttttgcatcaattaatactgctgacaaggcatgtgat
ggctttcgtagacccaaagcagctctcactcatgtagataaacagattaagaaaactctg
tttccacctagagaaagtattgaagaatgccttagcatgtatatgtttccaaatctgaga
agcacacaacaaaaggctcgttttttaggttatatggtgaagtgtcttttgcaggctgct
actggtcgtagaaaatgcaataacaaggacgattttagaaataagagattagatttagct
ggtgagttgctagagcgagagctaagggctcatgtttcccatgcacggaagcgcatggct
aaggctttgcagagggacctttatggagatagagcattgcgatcgattgaattctacctg
gatgcttctatagtcacaaacggtctatcgagagctttctcaactggggcatggtgtcat
cctttcaagcggacagaaaggatttcaggggtagtggcaaatgttggccgaacaaatcca
ctgcagacaattgtagatatgaggaaaacacgccagcaagttcagtacactgggaaggtt
ggagatgctagatacccacatccttcccactgggggaaggtttgctttttggctacccca
gatggtgaaaattgcgggcttgtgaaaaatttggctactactggattagtaagtttagaa
gtggtggaatcactcgttcccaagttgtgcgatagtggcatggagaaattggtgaatgat
acttctacaccacttgatgggaattataaagtttttctcaatggggattggataggagtt
tgtgtcgatgcccttgcctttgttaggagactgaggaaaatgcggcgcagaaaggaattg
ccacaccaggtggaaattaaaagagatgaaaagcatggggaaatacgtatattttctgac
gccggaagaattttgcgtccccttctagttgttgagaatttgagtaagattacaccatct
aaagctggaaaatacacttttcaatctcttcttgataggggaatagttgagcttattgga
gctgaagaagaagaggattgccgaactgcgtggggtatcaaatttcttttaatggaagat
aagggaaagcccattgagtatacacactgtgaactggacatgtcttttttgttgagtgta
agctgtggaatcataccatttgcaaatcatgaccatgcaaggagagtcttgtaccagtct
cagaagcactctcaacaggctattggtttctccacaacaaatcctaatatcagagtggat
actttgtctcaccaattgcattacccccaaaaacccctctttcgaacaattatctccgac
tgtcttggaaaacaaggttatgcacttaatcatgatggattccttccgaagaatgaatgc
ttcaatggccagaatgccattgttgctgtcaatgttcaccttggctacaaccaagaagat
tccttggtgatgaaccgagcttctttggagcgtggtatgtttcgatctgagcacattaga
agctacaaggctgaggttgacaataaggaatcattagacaaaaagggaaagcctgatgaa
tgcatcaattttggaaagataccaagtaaaattggtcgtgttgatagcctagatgatgat
ggtctaccttttgttggtgccaacctacagagtggtgatatagttataggtaggtgtgct
gaatcagatgttgatcatagtattaaactgaagcacactgaaaaggggatggttcaaaag
gttgtcctttcctctaatgatgctggaaaaaactttgctgtggtctctctgagacaggtt
cgtacaccaattcttggagacaaattctcgagcatgcatggacaaaagggtgttttgggc
tttttggaatcccaagaaaacttcccctttacaatacaagggatagttccagacattgtc
atcaatccacatgcatttccatcgcgacaaactccaggtcaacttctggaggctgcttta
ggaaaggggattgctttagctaaagggatcccagtgagacacgccacccctttcgccact
ccctcggttgatgctatcacagaacagctgcatagggctggattctcaagatgggggaat
gagagagtatacaatggccgaacaggtgaaatggtccgatcacttatcttcatggggcca
actttctatcagcgtctggttcacatgtctgaagataaagtaaagtttcgaaacaccggt
ccagtccaccctctaactcgtcagccagtggcagaccgtaaacgtttcggtggggtcaag
ttcggggagatggagcgagactgccttctagcccacggtgcatcagcaaacttgcacgag
cgcctctttactctgagcgactcttctcaaatgcacatttgccagaaatgccaaaatatt
gcttacataatccaacgagcattggctggtggccggaagattaggggtccgtattgccgg
atatgcgagtcagccgacgacatagttaaggtcaatgtgccttatggagccaagctgttg
tgccaagaactcttcagcatgggcatcgcgttgaagtttgaaacccagatttgctga

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