Humulus lupulus (common hop): 133829647
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Entry
133829647 CDS
T11341
Name
(RefSeq) polygalacturonase-like isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp00040
Pentose and glucuronate interconversions
hlp01100
Metabolic pathways
Module
hlp_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133829647
Enzymes [BR:
hlp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
133829647
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
DUF2020
Motif
Other DBs
NCBI-GeneID:
133829647
NCBI-ProteinID:
XP_062115368
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Position
4:2368123..2372100
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AA seq
423 aa
AA seq
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MYVKTLHFFLPLLALLTSSSVPFSYGQNQENPLAISTLGPVSRLSHGSSHWKPSQIFNVD
DFGAKGDGTDDRKAFNKTWNQACSSKGGVFLVPNRTYLLGPMNFTGPCKFSLLTLKIVGT
IEASTEQSEYREDLWHWLVFVSVKNLRVEGGGTFDGKGKVWWKNSCSVINSLSCVRSPIA
VTFYDCKNLNVTNLRFKDGQRFHLFFDACVNVKAENILVTAPSNSPNTDGIHMRSTQHIH
VMNSIIKTGDDCISIINGSTNVRATDITCGPGHGISIGSLGPNNTESKVYNVTVDTVTML
GTSNGVRIKSWQGGSGYGENIIFQNIAMYNVTNPIIIDQYYCDQKDPCPEQYSAVRISNV
FYNNITGSSFSKVAVKINCSKTFECQGISMRDVNLVREGDGVVEASCNNVGLIKKGLVFP
SCS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtaaaaacactccatttttttctccccttgctagctctactaacctcttctagt
gttcctttctcttatggccaaaaccaagaaaacccacttgccatttccactcttggacct
gtttcaaggctcagccatggaagctctcactggaaaccatcccagatcttcaatgtagat
gattttggagctaagggtgatggcacagatgacagaaaggcatttaacaagacttggaat
caggcttgttcttccaaagggggtgtttttttggtcccaaacagaacttatctccttggg
ccaatgaattttactggcccttgcaaattttctctgctcactttgaagattgttggaaca
attgaagcttctactgagcagagtgagtacagagaagatctgtggcactggcttgtgttt
gttagtgtgaaaaacttgagagttgaaggaggtggaacttttgatggtaagggaaaagtt
tggtggaaaaactcttgcagtgtcatcaattccctttcctgtgttcgttctccaatagct
gtaactttctatgattgtaagaatctaaatgtgaccaatctgaggttcaaagatggacaa
agattccatctattctttgatgcatgtgtcaatgtcaaagctgaaaatatattagtgaca
gccccaagtaacagtccaaacacagatggaattcatatgagaagcacacaacatattcat
gtgatgaactctattatcaaaacaggtgatgactgtatttccatcataaatgggtcaacc
aatgttagagctacagatataacttgtggtcctggtcatggaataagcattggtagctta
ggacctaataacacagaatctaaagtctacaatgtgacagtggacacagtaacaatgttg
ggaacttctaatggagtcagaataaagagttggcagggaggatctggttatggagaaaac
ataatctttcaaaacatagcaatgtacaatgtgaccaaccccatcatcatagaccaatac
tattgtgatcaaaaggacccttgtcccgaacagtattcggcagtacgaataagcaatgtg
ttctacaataacataactgggagtagcttctcaaaagtggctgttaagattaattgtagc
aagacttttgaatgccaaggaatttcaatgagagatgtgaatttggtaagagagggagat
ggtgtggttgaagcttcttgtaacaatgttggattgatcaaaaaaggattggtttttcct
tcatgctcataa
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