Humulus lupulus (common hop): 133830658
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Entry
133830658 CDS
T11341
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133830658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hlp03041
]
133830658
Enzymes [BR:
hlp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133830658
Spliceosome [BR:
hlp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133830658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
AAA_22
DEAD
AAA_19
AAA_30
PWI
T2SSE
nSTAND3
SRP54
AAA_16
PhoH
TsaE
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
133830658
NCBI-ProteinID:
XP_062116659
LinkDB
All DBs
Position
4:97532684..97575837
Genome browser
AA seq
1047 aa
AA seq
DB search
MGSDGNLKTWVSDKLMSLLGYSQSTLVQYVIGLSKQANSPADVVSKLVEFGLSSSSETRT
FAEEIYNRVPHKASGLSVYQKQEKEAAMIARKTYALLDADDEDDDDNHGAGSCIISVNST
TEKRAASCNKRFRKKADVLDDDDEDIAQREEQRQVKRRATSDEDDDSESDEMLRDQKERE
QLERNLKERDAVATRKLTERKLSKKDEEEAIRRSNALEEDDLDTLRKFSRQEYLKKREQK
KLEEIRDDIEDEQYLFDGVKLTEAENRELRYKKEIYELVKKQSEATDDISEYRMPDAYDD
QDGGVNQEKRFAVAVQRYRDPTAGDKMNPFAEQEAWEEHQIGKATLKYGSKNKKQTSDGY
QFVFEDQIDFIKASVMDGDEFAVEHDDLHEKSMAQSAFEKLQEDRKTLPMYQYHDQLLQA
INDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVK
LGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDIL
FGLVKDIARFRPDLKLLISSATMDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYL
DAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEIMKHRIRGLGTKIAELIICPIYANLP
TELQSKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLIT
PVSKASANQRAGRSGRTGPGKCFRLYTAYNYYNDLDDNTVPEIQRTNLANVVLMLKSLGI
HDLLHFDFMDPPPSEALLKALELLFALSALNKVGELTKVGRRMAEFPLDPMLSKAIVASE
KYKCSDDIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHLALLKVYSSWKET
NYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNPNDLEAIKKSITSGYFPHS
ARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTSKEYMRQVTELKPEWLVE
IAPHYYQLKDVEDSSTKKMPRGEGRAS
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgacggcaatttgaagacatgggtatctgacaaattaatgtcattgttggga
tattctcaatccacacttgttcaatatgttattgggttatctaaacaagcaaattcacca
gctgatgtggtgagtaagcttgtagagtttggattatcttcatccagtgaaacacgaacg
tttgctgaagaaatctacaacagggtgcctcacaaagcatccggattaagtgtttatcag
aaacaggagaaagaagcagcaatgattgcgaggaagacgtatgctctacttgatgcagat
gatgaagatgatgatgacaatcatggtgctggtagctgcatcatttctgttaattctact
actgaaaaaagagcagcatcctgtaacaaaaggtttaggaagaaggctgatgttctagat
gacgatgatgaggacatagcacagagggaagaacagagacaagttaaaagacgagcaacc
tcagatgaagatgatgattctgagtcagacgaaatgttacgtgatcagaaagagagagag
caattagagagaaatctaaaagaacgagatgcagtagccacccgcaagttaacggagcga
aagttatcaaaaaaggatgaggaggaggctattcgaaggtctaatgctttggaggaagat
gatcttgatactttaagaaaattttcaagacaagaatatttgaagaaaagagaacaaaag
aaactggaggaaatcagagatgatatagaagacgagcagtatctatttgatggtgtgaag
cttactgaagcagaaaatcgtgaattgaggtataagaaggaaatatatgagcttgtgaag
aagcagtcagaggcaactgatgatataagtgagtacagaatgccagatgcctatgatgat
caggatggtggtgttaatcaggagaagagatttgctgtggctgtgcaacgttacagggac
ccaactgctggggacaaaatgaatccttttgcagaacaggaagcctgggaagaacatcaa
attggtaaggcaacattgaaatatggttcaaaaaacaaaaagcaaacgtctgatggctac
cagtttgtgtttgaggaccagattgattttatcaaggcatcagtaatggatggcgatgag
tttgctgttgaacatgatgatttacatgagaagtcaatggcacaatcagccttcgagaag
ctgcaggaggacaggaaaactttgcccatgtatcaatatcatgatcagttgctccaagct
attaatgatcatcaggttctggttattgttggtgaaactggttcaggaaagaccacacaa
atacctcaatatcttcatgaagctggatatacaaaacgtggaaaggttggatgtacacag
ccacggcgagttgctgctatgagtgttgctgcaagggttgctcaagaaatgggtgttaaa
cttggacatgaggttggttattccatccgttttgaagactgcacatctgacaagactgtt
ctgaagtacatgacagatggaatgctgttgcgggaatttcttggagaaccagatttggca
agctacagcgtggtgatggtggatgaggcccatgaaaggacactctcaactgacattctt
tttggcttagtgaaagatattgctcgatttagaccggatctaaagttacttatttctagt
gcgacaatggatgcagagaagttcagtgattactttgattctgctccaatttttaaaatt
ccaggtagacgatatccagtagaaattcattacacaaaagcacccgaagctgattactta
gatgccgcaattgtgactgcacttcaaatccatgtgacacagccacctggggatatattg
gtgttccttacgggtcaggaagaaattgagacagcagaagaaattatgaagcatagaata
cggggtcttgggacaaagattgctgagttgatcatctgccccatatacgccaacctgcca
acagagctgcaatctaaaatatttgaaccaacgcctgaaggggcaaggaaggttgtcctt
gccacaaatatagctgagacatcattaacaattgatgggattaaatatgtcattgaccca
ggtttttgtaagatgaagtcgtacaatccaaggactggaatggaatcgttgctaatcact
ccagtatccaaggcatcagcaaatcagagggctggtcgatctggtcgaacaggcccagga
aagtgcttccgattatatactgcttacaactattacaatgatttagatgacaatactgtt
ccagaaatacagcgaactaatcttgcaaatgtggtgcttatgctcaagagccttggtatt
catgacttattacattttgatttcatggatccaccaccttctgaagcactactaaaagca
ttagaactgcttttcgccttgagtgccttaaataaagtgggtgagttgactaaagtgggt
agacggatggcagaatttcctcttgatcccatgctgtcaaaagcaatcgttgcttcagag
aagtacaagtgctcagacgatatcatttccattgctgccatgctttctattggcaattca
atattttacaggccaaaagacaaacaagtccatgctgacaatgcacgcttaaattttcat
actgggaatgttggagaccaccttgcgctgcttaaggtttacagttcatggaaagaaaca
aattactcaacacaatggtgttatgaaaattacatacaggttaggagtatgaaacgtgca
agagatatcagagatcaacttgagggacttctggagagagttgagattgagctagtctca
aatcccaatgatttagaagctataaagaagtcgatcacgtccggttacttccctcactct
gcaaggctgcaaaagaatggctcttatcgaacagtcaagcatccacaaacagtccatata
caccccagctcagggcttgcccaggtgcttccaagatgggttgtataccatgaattagta
cttacaagcaaagaatatatgagacaggttacggaactaaagccagagtggctggttgaa
atagccccacattactaccagcttaaggatgttgaagactcgagtacaaagaagatgcct
cgcggagaaggccgggcatcatag
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integrated database retrieval system
