Humulus lupulus (common hop): 133830695
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Entry
133830695 CDS
T11341
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03030
DNA replication
hlp03420
Nucleotide excision repair
hlp03430
Mismatch repair
hlp03440
Homologous recombination
hlp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133830695
03420 Nucleotide excision repair
133830695
03430 Mismatch repair
133830695
03440 Homologous recombination
133830695
03460 Fanconi anemia pathway
133830695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlp03000
]
133830695
03032 DNA replication proteins [BR:
hlp03032
]
133830695
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133830695
Transcription factors [BR:
hlp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133830695
DNA replication proteins [BR:
hlp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133830695
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133830695
MMR (mismatch excision repair)
133830695
DSBR (double strand breaks repair)
HR (homologous recombination)
133830695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
133830695
NCBI-ProteinID:
XP_062116717
LinkDB
All DBs
Position
4:106042343..106045961
Genome browser
AA seq
625 aa
AA seq
DB search
MAAKAPTPDAISIILANPSPDTSTEMPDIVVQVLDLNAKGNRYMFTASDGKKKLKGILPS
HITPQVISGDIQNLGLIRILDYSLNDIPSKSEKYVIITKCETVSPPLEMEIKDEIKSEGV
GVFLKPKQEIEVKSEVKRADAGVLLKPKQEIISKSAAQIVHEQHGNMAPAGRMAMTRRVH
PLVSLNPYQGSWTIKVRVTNKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNEAARK
FYDKFELGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVSSEAAFVPETKFNFV
PIDMLGPYVSGKELVDVVGVVQSVSPTMSIRRKSNNESIPKRDITISDESKKTVVVSLWN
ELATSVGQQLLDIADQSPVVAIKSLKVGDFQGLSLSTLSRSMLMVNPDIPEAKNLKSWFD
SEGKVASLASVGTGMSPSSRNGGRSMYNDRVSLSHITENPSLGDDKPAYFSIRAYVSFIK
PDQTMWYRACKTCNKKVTEAIGSGFWCEGCQKNDEECCLRYILVIKASDASGEAYVSAFN
EEAERIIGSSADELNTLKNQEGEDNLFEQKLKQATWVPHLFRISVSQNEYNNEKRQRLTV
RAIAPVDYAVESRFLLEEISKMRAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaaagctccgaccccagatgcgatttcaatcatactcgccaacccttcgccg
gacacctccacagagatgccggacattgttgtccaggtcctcgatctcaatgccaagggt
aaccgatacatgtttactgctagtgatggaaagaagaagctaaaagggattctcccatca
catattactcctcaggttatctcaggagatattcagaatctgggtcttattcgcattctt
gattattctctgaatgacattccaagcaagtcagaaaaatatgttattattaccaagtgt
gagacagtttctcctccacttgaaatggaaattaaggacgagatcaagagcgagggagtt
ggcgttttcttgaaaccaaaacaagagattgaggtcaagagtgaggtgaaaagagcggat
gctggtgttttgttaaagcccaagcaggaaatcatttctaaatcagctgctcaaatcgtt
catgagcagcatggaaatatggccccagctggacggatggccatgactcgcagagttcat
ccccttgtttctttgaatccttatcaaggcagttggacaataaaggtccgggttacaaac
aaaggaaacatgcgtacgtataaaaatgctagaggtgaaggctgtgtatttaatgtggaa
ttgacggatgaagaaggaacccaaattcaagcaactatgtttaatgaagctgcaaggaag
ttctatgacaagtttgaattggggaaggtttattatatttcaaaggggactcttaaggtt
gctaacaagcagtttaagacggtgcaaaatgattatgagatgactttgaacgagaactct
gaagtggaggaagtaagcagtgaagcagcttttgttcctgaaacgaaattcaattttgtc
ccaattgacatgttgggtccctatgttagcgggaaggaacttgttgatgttgtaggtgtt
gttcaaagtgtctccccaacaatgagcatcagaagaaagagcaacaatgaaagtattcca
aagcgtgatattacaatttctgatgagagtaaaaagacggttgtggtttccttgtggaat
gagcttgcaacaagtgtaggccagcaattgttggatattgccgatcaatctcctgtagtt
gctattaagtctctcaaagttggagattttcaaggcttgtctctgtcaacattaagcaga
agcatgctaatggtaaatccagatataccagaagcaaagaatttgaaatcttggtttgat
tctgaaggtaaagtggcctcgttggcatctgttggcactggtatgagcccatcatccagg
aatggaggaagatccatgtacaatgatagagtctctctgtctcatataactgaaaaccca
tccttaggcgatgacaagcctgcatatttcagcatcagagcatatgttagctttatcaaa
cctgatcagacaatgtggtatcgggcttgcaaaacttgtaacaagaaagtcacagaagct
attggttctggtttttggtgtgaaggatgccagaagaatgatgaagagtgctgcttaaga
tatatattggtgattaaagcatcagatgcaagtggtgaagcttatgtttctgcatttaat
gaagaagcagaaaggatcattgggagttcagcagatgagcttaatacactgaaaaatcag
gagggagaagacaacttgtttgagcaaaaattaaaacaagctacctgggttcctcatctt
ttccggatcagtgtttctcaaaacgagtacaacaatgaaaagaggcaaaggttaacagtc
agggccattgcccctgttgattatgctgttgaatcaagatttttgctagaggagatatca
aagatgagagcttcctga
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