Humulus lupulus (common hop): 133831559
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Entry
133831559 CDS
T11341
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
133831559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133831559
Enzymes [BR:
hlp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
133831559
DNA repair and recombination proteins [BR:
hlp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
133831559
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
TMEM119
Motif
Other DBs
NCBI-GeneID:
133831559
NCBI-ProteinID:
XP_062117902
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Position
4:complement(246091080..246095655)
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AA seq
532 aa
AA seq
DB search
MNQIQALQFGFKNFLKVVPWILRPGPLVSLRLSASSMSSKRTISSSSKPISAMAEEKTEG
KRLKALVDSTPDCVKPVLKENGMESVSVGIASFKDNPETIEKMTVQELRTTLRSNGLSAK
GRKSELVSALKLFVEKINGESSQKEEEAECLHEENQVQNVSIVSEVHELRKSNRASKQSG
VEANAVQFDLIAVTTKQNSSVESVEVSGGKLSKKKRTMSSETISAKADRKDETSMMQNEP
WTMLAHKKPQKDWIPYNPRTMRPPFISSDTKSVKLLSWNVNGLRALLKLDGFSALELAQR
EDFDILCLQETKLQEKDVEKIACLIDGYHNSFWTCSTSKLGYSGAAIISRIKPLSVKYGL
GMEDHDSEGRLVTAEFDSFYLVCGYVPNSGDGLKRLSYRTTEWDPSLSNYIKELEKSKPV
ILTGDLNCAHQEIDIYNPAGNKRSAGFTIEERQSFETNFLSKGFVDTFRRQHPGVVGYTY
WGFRHGGRKTNKGWRLDYFLVSESIADQVHDSYILPDVHGSDHCPIGLVLKL
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaattcaagctctgcaatttgggttcaagaatttcctcaaagtagttccttgg
attttgagacctgggccactggtttctttgagattaagtgcgagttcaatgagttctaaa
cgaaccatttcgagttcttcaaaacccatttcggcaatggctgaagagaagactgagggt
aaaagattgaaggctttagtggatagtacaccagattgtgtgaagcctgttctcaaggaa
aatgggatggagagcgtttcagttggaattgcaagttttaaggataaccctgaaacaata
gagaaaatgactgttcaggagcttagaacaacattgaggagcaatgggctttctgctaaa
ggtcgtaaatctgagctcgtatctgccttgaagttgtttgtggagaagataaatggtgaa
agttctcagaaagaagaagaggctgaatgtttacatgaagaaaaccaggttcaaaatgtt
agtattgtttcagaggtccacgaacttagaaaaagtaatagagcttcaaaacaatcagga
gttgaggccaatgctgtccagtttgatcttatagctgttacaacaaagcagaactcttca
gtcgaatctgttgaggtttcaggtggaaagctctctaagaaaaagagaactatgtcttca
gaaactatttctgctaaagctgatcgcaaagacgaaacgtccatgatgcaaaatgagcca
tggacaatgcttgcacacaagaagcctcagaaagattggattccctataatcctagaacc
atgaggcctccttttatttctagcgatacgaagtctgtgaagcttctgtcttggaatgtc
aacggattaagagcattgttaaagttagatgggttttcagcactggaacttgctcaaagg
gaggattttgatatattatgcttgcaggagaccaaactacaggaaaaggatgttgaaaag
attgcttgtttgatagacggttatcataatagcttctggacgtgtagtacttcaaagctt
ggttattctggagctgcgattatttcccggataaagccactttctgtcaaatatgggctt
ggtatggaagatcatgatagcgagggccgattagtgacagctgaatttgattcattttat
ctagtttgtggatatgttcctaattctggagatggcttgaaaagactgtcatacaggacc
acagaatgggatccatccctcagcaattacataaaagagctggaaaagtctaagcctgta
attttaactggtgatctgaactgtgctcatcaagaaatagacatatataatcctgcagga
aataaaagaagtgctggctttacgatcgaagaaaggcaatcatttgagacaaacttttta
tctaaaggctttgtggataccttcagaagacaacaccctggtgttgtcggctatacttac
tggggttttaggcacggcggacgcaaaactaacaaagggtggcgacttgactacttcctc
gtctcagaatccatagctgaccaggttcacgattcgtacattctccctgacgtgcatggt
agtgatcattgtcccattggtcttgttctaaagttgtag
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