Humulus lupulus (common hop): 133834716
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Entry
133834716 CDS
T11341
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133834716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlp03019
]
133834716
Messenger RNA biogenesis [BR:
hlp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133834716
U7-dependent histone pre-mRNA processing factors
133834716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
133834716
NCBI-ProteinID:
XP_062120405
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Position
5:complement(30825529..30832024)
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AA seq
742 aa
AA seq
DB search
MGTSVQVTPLCGVYSESPLSYLVSIDGFNFLIDCGWNDHFEPSILQPLSKVASTIDAVLL
SHPDTLHLGALPYAMKQFGLSAEVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDID
SAFQNVTRLTYAQNHHLSGKGEGIVISPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
KHLNGINPSSFVRPAVLITDAYNALNNQPYRRQMDKEFTDTIKKTLRTDGKVLLPVDTAG
RVLEIIQILESCWAEENLNYPIYFLTYVSSSTIDYVKSFLEWMSDSIAKSFETTRDNAFL
LKHVTLLVNKNELDNAPDGPKVVLASMASLEAGFSHDIFVDWANDARNLMLFTERGQFGT
LARMLQADPPPKAVKVTLSKRVPLVGEELIAYEEEQNRIKREEALKASLIKEEESKASNG
PDAIVSDPMIVDASNAHPLPDVAGPHGSGYRDILIDGFVPPSTSVAPMFPFIENTSEWDD
FGEVINPDDYVIKDEDMDQAGMLMGGDMEGKLDDASASLILDTKPSKVVSNELTVSVKCS
LLYMDFEGRSDARSIKSILSHMAPLKLVLVHGTAEATEHLKQHCMKQVCPYVYAPQLEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGEYEIAWVDSDVGKTENDTLSLLPLSTAPPPPH
KSVLVGDLKMANFKQFLADNGVQAEFAGGGALRCGEYVTLRKVGDASHKGGGPGTQQIVI
EGPLCEDYYKIRDYLYSQFYLL
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggggacttcagtgcaggtaacgccgctttgcggtgtctacagcgagagcccattgtcg
tacttggtttcaatcgacggtttcaacttcctcatcgactgtggctggaacgaccacttc
gaaccttctattcttcaacctctctccaaggtagcctcaaccattgatgcagttctgtta
tctcacccagatacacttcatctgggtgcactcccatatgcaatgaaacaatttgggctc
tcagctgaagttttttccactgagcccgtttatagattaggtcttctcactatgtatgat
caatttctctcgcgaaagcaagtatctgagttcgatttgtttactttggatgatattgat
tctgctttccagaatgttactcgacttacctatgcccaaaatcatcacctttctggtaaa
ggagaagggattgttatatcacctcatgtggctgggcatttgttgggtggtactgtgtgg
aagataactaaggatggtgaggacgttatatatgctgttgacttcaaccatcgcaaagaa
aagcatttgaatggaataaatccatcctctttcgtgcgccctgccgttttaataacagat
gcctataatgctttgaacaaccagccttatagacgccaaatggacaaagaatttacagat
accataaagaagactctaagaacagatggaaaagtgttactacccgttgataccgctggg
cgagttttggaaattattcaaattttggaatcgtgctgggcagaggaaaatttgaactat
cccatatactttttaacatatgtttcatcaagcaccattgactatgtcaaaagtttcctt
gaatggatgagtgattctattgcaaagtcttttgaaacgacacgtgataatgcctttctt
ttgaagcatgtcacacttttagttaacaagaatgagcttgataatgctccagatggtcca
aaggtggttctagcatcaatggccagtttggaagcaggtttctctcatgacatatttgtt
gactgggcaaatgatgcacgaaatctcatgctttttacagaaagaggccagtttggcaca
ttggctcgtatgcttcaagcagatccacctccaaaagcagttaaagtcactttatccaag
agggtccctttagttggggaggaactaattgcctatgaagaagaacaaaaccgaataaaa
agagaggaggctttaaaggctagccttattaaagaggaggaatcaaaagcttctaatgga
cctgatgctatcgtgagtgatccaatgatcgttgatgctagcaatgctcatcctttgcca
gatgtggcaggtccacatgggagtggataccgggatatattaattgatggatttgttcca
ccttccacaagtgttgctccaatgtttccctttattgaaaatacttctgagtgggatgat
tttggtgaagtaattaatcctgatgattatgtaatcaaggatgaagacatggaccaagca
ggaatgcttatgggtggcgatatggagggcaagcttgacgatgcctctgctagtttgata
cttgacacgaagccatcaaaagttgtatctaatgaattgactgtgtctgtcaaatgttca
ttgctttatatggattttgagggccgttctgatgcaagatccatcaagtcaattctgtcc
catatggctcctctaaagcttgttctggttcatggaactgcagaagccacagaacatttg
aagcaacactgtatgaaacaagtttgtccttatgtttatgctcctcaacttgaagaaaca
attgatgtcacctctgatttatgtgcttataaggtacaactgtctgaaaagctgatgagt
aacgtgctgtttaagaagctcggagaatatgaaatagcttgggttgattctgatgttggg
aagacagaaaatgatacattgtctttacttcccctctcaaccgcaccaccaccaccccat
aaatcagtccttgtaggtgatttgaaaatggcaaacttcaagcagtttcttgccgacaat
ggtgtccaggctgaatttgccggcgggggggcactacgatgtggtgaatatgtgacactg
cgcaaggttggagatgccagccataagggtggtggtcctggtacgcagcaaattgttatt
gaagggcctttatgtgaggattattataagattcgagattatctgtattcacagttttat
ttgctttaa
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