Humulus lupulus (common hop): 133834832
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Entry
133834832 CDS
T11341
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
hlp Humulus lupulus (common hop)
Pathway
hlp03030
DNA replication
hlp03420
Nucleotide excision repair
hlp03430
Mismatch repair
hlp03440
Homologous recombination
hlp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hlp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133834832
03420 Nucleotide excision repair
133834832
03430 Mismatch repair
133834832
03440 Homologous recombination
133834832
03460 Fanconi anemia pathway
133834832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlp03000
]
133834832
03032 DNA replication proteins [BR:
hlp03032
]
133834832
03400 DNA repair and recombination proteins [BR:
hlp03400
]
133834832
Transcription factors [BR:
hlp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133834832
DNA replication proteins [BR:
hlp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133834832
DNA repair and recombination proteins [BR:
hlp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133834832
MMR (mismatch excision repair)
133834832
DSBR (double strand breaks repair)
HR (homologous recombination)
133834832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
DUF223
zf-CCHC_2
DUF936
Motif
Other DBs
NCBI-GeneID:
133834832
NCBI-ProteinID:
XP_062120570
LinkDB
All DBs
Position
5:complement(54280264..54285226)
Genome browser
AA seq
885 aa
AA seq
DB search
MAVTLTEGAITRICTEEFRKEDSWKPVVQILDLRMVNTQGGQPVPPEKERFRVRLSDGSH
FQQGMLGTQVNDLVRQGRLQKGSLIRLNEFVCTPVQGRLIIIIVDLELVLETCDLIGEPE
LVTKPANSPLSGLVTGSAQLSSGSRFSTGAVNETVAGMSMDNTRMNQSFGSPYSSNFDSG
RYGATNLPSTYTKSDPSDRSYSHLNTGVGEPAPISGLYGNQNLGFRSPRPEVSRPPLNSY
GRTPPASYQQPPPNSYGRTPQPAYQQPPPMYSNRGPVAKNEAPARIIPISALNPYQGRWT
IKARVTAKGELRHYNNARGDGKVFSFDLLDSEGGEIRATCFNAVADQFYNQIEVGRIYMI
SKGSLKPAQKNFNHLRNDQEIFLESSSTIHPCFEDDNAIPQQQFHFCSISDVEGMENNNI
VDLIGVVSSISPATSLMRKNGTETQKRALHLKDMSGRSVELTLWGIFCNAEGQRLQNMCD
SGVFPILAVKSGRISDFNGKVVGTISSSQLFIEPDFPEAHSLKEWFEKEGKNTPSVSISR
ELVGTGRTDVRKTISQIKDEKLGTSEKPDWITVSATVSFIKVDNFCYTACPLMIGDRQCN
KKVTNNGDGKWRCERCDQCIEECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVSAKSL
YFLKFEEQDEEKFAEIIRKVLFTKFTFKLKIKEETYSDEQRVKSTVVKAEKVSFSSEAKF
LLDLLEKLNREDFSSAPKVEKIISNPGLTTPVDFGNTAGAGREFGAPANLVGQYGNQYSG
GSRLSATTSSGSYLSCNSCGATGHSSMNCPSIVNGPGQPLGGSYTNRLSSGPVGNVSGEC
FKCHQTGHWARDCPGSREIPPSYGSSGAVSGRYGGGFPKQHVGGF
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcacgctgacggaaggtgcgattacgaggatttgtacggaggaattccgtaag
gaagatagctggaagccggtggttcaaatcctggacttgaggatggttaacacgcaaggg
ggtcaacccgtacctcccgagaaggaaaggttcagagttcgactctccgatggttcgcat
tttcaacaagggatgttagggacacaggtcaatgatctggtcagacaagggaggttgcag
aagggctctcttatccgattgaatgaatttgtctgcactccggtccaaggccgactgatc
attatcatagttgatctggagctggtacttgaaacatgtgatctaattggtgaacctgaa
ctggtaacaaaacccgcaaattccccattatcgggattggttactggaagtgctcaattg
tctagtggcagtagattttctactggggcagtgaatgaaactgtggctgggatgtctatg
gataacactaggatgaatcaatcatttggcagtccttactctagtaattttgattctgga
agatatggggcgactaatttgccttccacgtacaccaagtcagatcccagtgataggtca
tatagccatctgaacacaggagttggggaaccagcaccaataagtgggttgtatggtaat
cagaacttgggtttccgcagccctagacctgaggtttcacggccgcctctaaattcttat
ggtcgtacgccaccagcatcatatcaacagccaccgccaaattcttatgggcgcacaccg
cagccagcttatcaacagccacctccaatgtatagtaatagaggaccagtggccaaaaat
gaagcacctgcaaggataataccaatttctgcacttaatccttaccaaggaagatggaca
attaaggctagagtgacagcaaagggagagcttaggcactacaacaatgctcgtggtgat
gggaaggtattttcttttgatcttctggactctgagggtggagaaattcgggcaacctgt
tttaatgctgtggctgatcagttttacaatcagattgaagttggtaggatttatatgata
tccaagggtagtttaaaaccagcacagaagaatttcaaccatctccgcaatgatcaagag
atttttctggagagctcatcgacaatacatccatgttttgaggatgataatgcaattccg
caacagcaatttcatttctgttctataagtgatgttgagggcatggagaacaacaatatt
gtggatttaattggtgttgtgtcatctattagtcctgcgacctcattaatgagaaaaaat
ggcacagagactcaaaagagggcgcttcatttgaaagacatgtctggccgaagtgttgaa
ttaactttgtggggaattttttgcaatgcagaaggacaaagactgcagaatatgtgtgac
tctggggttttccccattctggctgtgaaatctggtagaatcagtgatttcaatggaaaa
gttgtgggtacaatttcttcaagtcagctatttatagagcctgattttcctgaggctcac
agtctgaaggaatggtttgagaaggaagggaagaataccccatctgtctctatttccagg
gaattagtaggtacaggtagaacagatgtccgaaaaactatatcccaaataaaagatgag
aagttggggacttctgaaaagccggattggataactgttagtgcaactgtttctttcata
aaggttgataatttctgctatacagcatgccctctaatgattggtgatcgacaatgcaac
aaaaaggtcacaaataatggagatgggaaatggcggtgtgagagatgtgaccagtgtatt
gaagaatgtgactaccggtatatactccagttacaaatacaagatcatactggcttgaca
tgggtaactgcatttcaagagggtggtgaggagataatgggtgtctctgctaaaagttta
tatttcttgaaatttgaagaacaagatgaggagaagtttgctgaaataattcgtaaggtt
ctatttactaagtttacgtttaaattgaaaataaaagaggaaacatacagtgatgaacaa
cgtgtaaaatcaactgtggtgaaagcagaaaaagtgagtttttcatctgaggccaaattt
cttctggatttattggaaaagttaaacagagaagattttagctctgctccaaaggtagaa
aaaatcatttccaaccctggattaactacaccagttgactttggtaatactgcgggtgct
ggtagagaatttggtgctccagcaaatctagtgggtcagtacggcaatcagtatagtggt
ggttctaggctttctgcaactacctcctctggttcatacttgagctgtaatagttgtggg
gctactggtcatagctctatgaactgcccgagtatagtaaatggtccaggacagccactg
ggagggagctatactaatagactatcttctggccctgttggtaacgtctcaggtgaatgt
tttaaatgccatcaaactgggcattgggcgagagattgtcctgggtccagagagattcct
ccatcttacggaagcagtggtgctgtttcgggaagatacggaggaggattccccaaacaa
catgttggtggcttttga
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