Haloimpatiens lingqiaonensis: ACHF1L_14210
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Entry
ACHF1L_14210 CDS
T11655
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hlq Haloimpatiens lingqiaonensis
Pathway
hlq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hlq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACHF1L_14210 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlq03021
]
ACHF1L_14210 (rpoC)
03400 DNA repair and recombination proteins [BR:
hlq03400
]
ACHF1L_14210 (rpoC)
Enzymes [BR:
hlq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACHF1L_14210 (rpoC)
Transcription machinery [BR:
hlq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACHF1L_14210 (rpoC)
DNA repair and recombination proteins [BR:
hlq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACHF1L_14210 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
zf-RING_4
Motif
Other DBs
NCBI-ProteinID:
XJV97205
LinkDB
All DBs
Position
complement(3095018..3098554)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDAIQIGLASPEQIRAWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDV
SPRSLEKVLYFASYIVLDPKETPLLKKQLLNEKEYREAADKYGEDSFVAGMGAEAIKVLL
RELDLENLSIELKEELETSTGQKRVRIIRRLEVVESFRKSSNNPEWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVEKGVAHNIKSAKRMVERVMTEVWDVLEEVITDHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAIHVPLSVEAQSEARFLMLAAHNI
LKPSDGKPVCVPTQDMVLGSYYLTLDKDGAEGEGRVFSNVEEVLMAYQLGQIDIHAKIKV
RLTKELDGEKVSSIVATTPGKIIFNECIPQDLGFVDRSIPENEFKLEIDFLVSKKNLGKI
IDKCYAKYGPTGTSVMLDKIKATGYHYSSIGAITISTSDMTVPEAKKILLEETDKAVEKI
EKMYRRGFISEEERYERVIDKWTKTTEDVANALMDNFDKFNPIYMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRSSFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRTEDCGAEEGFEVSEIKEGNEVIETLEERLTGRYSAEDIIDPNSGEIIVS
KNSYMDANTAARVEKAGVKKVKIRSVFTCKCKFGVCAKCYGMNMATANRINIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIISEMAGTVRVEET
KKKRVVYVKNESGEETSYDIPFGSRLRVNNGDQIEAGDEITEGSINPHDIVRIKGINAVK
NYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKIEDSGDTELLPGTMIDIFDFEEQNN
KALEEENRPADGKVTLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKEN
VIIGKLIPAGTGMNKYRGIKMNLNRKDLEEDEENNIEA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgctatacaaataggcttagcttcaccagaacaaatt
agagcgtggtcaaggggagaagttaaaaagccagaaactataaactatagaacattaaag
ccagaaagagatggattgttctgtgagagaatatttggacctataaaagactgggaatgt
cattgcggaaagtataaaagagtaaggtataaaggaattgtctgtgacagatgtggagtt
gaagtaactaaagcaaaggttagacgtgaaaggatggggcatatagagcttgctgcccct
gtttcccacatatggtattttaaaggtataccatcacgtatggggcttatcttggatgta
tctccaagatccttggagaaagttttatactttgcatcctatatagttttagaccctaaa
gaaacaccacttttaaagaaacaattattaaatgaaaaagaatatagagaagcagcagat
aaatatggtgaagatagctttgttgcaggaatgggtgcagaagcaataaaagttttactt
agggaattagacctggaaaacttatctatagagcttaaagaagaattagaaacaagcaca
ggtcaaaagagagttagaattataagacgacttgaagtagtagagtcatttagaaaatct
agcaataatccagaatggatgataattgacgtgattccagtaataccaccagatttaaga
ccaatggttcaattagatggtggaagatttgctacttcagatttgaatgatttatataga
agagtaataaacagaaataatagattgaaaaaactattagatttaggtgcaccagatatc
atagttagaaatgagaaaagaatgcttcaagaagctgtggatgcacttatagataatggt
agaagaggaagaccggttacaggtccaggaaacagaccattaaaatcactatctgatatg
ctaaaaggaaaacaaggaaggtttagacaaaacttacttggtaagcgtgttgactattct
ggacgttctgttatagttgtaggaccggaacttaaaatgtatcaatgtggacttccaaaa
gaaatggctttagaactatttaagccttttgtaatgaagaagttagttgaaaaaggagta
gctcataatataaaaagtgctaagagaatggtagaaagagttatgacagaggtttgggat
gtactagaagaagttattacagaccatccagtgttactaaatcgtgctccgactcttcac
agattaggtattcaagcattccaaccagtacttgtggaaggtagagctataaaattacat
ccattagtatgtacagcatacaacgctgactttgatggagaccaaatggctatacatgta
cctttatctgttgaagcacaatcagaagctagattcttaatgttagcagcccataacata
ctaaaaccttcagatggtaagccagtttgtgttcctactcaggatatggtgttaggctca
tattacctaacattagataaggatggagcagaaggcgaaggaagagtattctcaaatgtt
gaagaagttttaatggcatatcaattaggtcaaattgatatacatgctaaaattaaggtg
agattaacaaaagaattagatggagaaaaagtttcaagtattgtagcaactacacctggt
aaaataatattcaacgaatgcataccacaagatttgggatttgttgatagaagtattcca
gaaaatgaatttaaactagagattgatttcttagttagtaagaagaatctaggaaagata
attgataaatgttatgctaaatacggtccaacaggaacatcagtaatgctagataagata
aaagctacaggatatcattattcaagtataggtgctattacaatttctacatcagatatg
acagtgccagaagctaagaaaatattattggaagaaacagataaagctgttgaaaaaata
gaaaaaatgtatagaagaggattcatatcagaagaagaaagatatgaaagagtaatagat
aagtggactaagacaacagaggatgttgctaacgccctaatggataactttgataaattt
aatcctatatacatgatggcggactctggagccagaggttctaagagtcagataaaacag
cttgctggtatgagaggattaatggctaatccatcaggtaagataatagaattacctata
agatcttcatttagggaaggattagacgtattagagtattttatttcaacacacggagct
agaaaaggtaacgcggatactgcgttaaagacagcagactctggatatttaacaagaaga
cttgtagatgttagccaggacgtaatagttaggactgaagactgtggtgcagaggaaggt
ttcgaagtttcagaaataaaagaaggaaatgaagtaatagaaactttagaggaaagactt
actggtagatacagtgcagaagacataatagatcctaattcaggtgaaataatagtaagt
aagaattcttacatggacgctaacacagctgctagagtagaaaaagctggtgttaaaaag
gttaaaataagatcagtatttacatgtaaatgtaagtttggagtatgtgctaagtgctat
ggaatgaatatggcaactgcaaacaggataaatattggtgaagctgttggtataattgcg
gctcagtccataggtgaacctggaacacagcttacaatgagaacattccacactggtgga
gttgctggagctgacataacacagggtcttccaagagttgaagaattgtttgaggcaaga
aaaccaaaagggcttgctataataagtgaaatggcaggtactgtaagagttgaagaaact
aagaagaaaagagtagtatatgttaaaaatgaatccggtgaagaaactagttatgatata
ccatttggttcaagattaagagtaaacaatggggatcaaattgaagctggagatgaaata
acagaaggttcaataaatcctcatgatattgtaagaatcaaaggtataaatgcagttaaa
aactatcttctttcagaggtacaaaaggtttacagacttcaaggtgttgatataaatgat
aagcatcttgaggtagtagtaaggcaaatgactagaaaagttaaaatagaagattcaggg
gatactgaattattaccgggtactatgatagatatatttgactttgaagagcaaaataat
aaggctttagaagaagaaaatagaccagcagatggaaaggtaactttattaggaattact
aaagcggccttagctacagattcgttcttatctgcggcttcattccaggaaactacaaga
gtacttactgatgcagctattaaaggtaaaatagatcctttagttggacttaaagaaaat
gttataataggtaagttgattccagctggaacaggcatgaataaatatagaggaataaaa
atgaatctaaatcgcaaagatttggaagaagatgaagaaaataatatagaagcttaa
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