Halostagnicola larsenii: HALLA_05180
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Entry
HALLA_05180 CDS
T03008
Name
(GenBank) DNA-directed RNA polymerase subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
hlr
Halostagnicola larsenii
Pathway
hlr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HALLA_05180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlr03021
]
HALLA_05180
Enzymes [BR:
hlr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HALLA_05180
Transcription machinery [BR:
hlr03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
HALLA_05180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RNA_pol_Rpb1_5
DUF6984
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AHF98360
UniProt:
W0JI23
LinkDB
All DBs
Position
92965..95928
Genome browser
AA seq
987 aa
AA seq
DB search
MQNSTPKDIGSINFGLMEPEEYREMSATKIITADTYDDDGFPIDMGLMDPRLGVIDPGLE
CKTCGKHSGSCNGHFGHIELAAPVIHVGFTKLIRRLLRGTCRECSKLLLTEDERDEFRDD
ITESRKLGRDLNDVTKAAIRQARKKDRCPHCGEIQYDIDHEKPTTYYEVQQVLTSEFSQR
IAGAMQGDEEEGIERTTPDELAEKTDIEITRVNEILSGSFRPRESQRKAIEKALDIDLTE
EDTNKLMPSDIRDWFENIPDEDIQVLGIDADRSRPEWMILTVLPVPPVTARPSITLDNGQ
RSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPARH
RSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVASEMTQ
TMLVTERNVEEARRYVANGPNTHPGANYVRRPDGRRLKVTEKNCEALAGMTEESDAEGIQ
TVGPGWEVNRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDG
DEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTHDNPRFNET
QALDLLRATRIDELPEPSGIDDEGEPFWTGRDVFSELLPDDLDLEFIGTIGEDVIIEDGQ
LVEGTIAEDEVGEFGGEIVDTITKQYGNTRSRVFINEISTLAMRAIMHFGFSIGIDDETI
PSEAQDRIDETILDANDRVEELIDAYDAGELESLPGRTIDETLEMKIMQTLSRARDNAGN
IAEEHFNEDNPAVVMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHYEPND
LSAEAHGFVENSYTSGLTPREFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELETQ
YDGTVRDTSDTIVQFEFGEDGTSPVKVGSDEEHVVDVEGIADRIVEAEFEDDAEKAAFIG
PKQETTNLSEHADSRRLPDGAEVSSDD
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacagcacaccaaaagacatcggatcgataaacttcgggctcatggagcccgag
gagtatcgggagatgagcgcgacgaagatcatcaccgccgacacgtacgacgacgacggg
ttccccatcgacatggggctgatggacccgcgactgggcgtcatcgaccccggtctcgag
tgcaagacctgcgggaaacactccggatcgtgtaacggccacttcggacatatcgaactg
gcagcgccggtcatccacgtcggctttaccaaactcattcgacggctccttcgcgggacc
tgtcgggagtgttcgaagctcctgttgaccgaggacgaacgcgacgagttccgcgacgat
atcacggagtcgcgaaaactcggacgggacttaaacgacgtcaccaaggcagcgattcgt
caggcgcgaaagaaggatcgctgtccccactgtggcgaaatccagtacgacatcgaccac
gagaagccgacgacctactacgaggtccagcaggttctcaccagcgagttctcccagcgg
atcgcgggagcgatgcagggcgacgaagaggaaggcatcgagcgaacgacgcccgacgaa
ctcgccgagaagaccgacatcgaaatcactcgagtcaacgaaatcctttcggggtcgttc
cgcccgcgcgagagccagcgcaaggccatcgagaaggccctggacattgacctcaccgag
gaggatacgaacaaactgatgccgagcgacatccgggactggttcgagaacattcccgac
gaggatattcaggtactaggaatcgacgccgaccgctcccgaccggagtggatgatcctc
accgtgttgccggttccgcccgtgacggcgcgaccgtcgattacgctggataacggtcag
cggagcgaggacgacctcacgcacaagctcgtggacatcatccggatcaaccagcgattc
atggagaatcgcgaggccggcgcgccacagctgatcatcgaggacctctgggaactgctc
cagtaccacgtcacgacgttcatggacaacgagatttcgggaacgccgccggctcgtcac
cgatcgggtcgcccgctcaagacactcagccagcggctgaaaggcaaggagggtcgattc
cgcggctcgctctcgggcaagcgcgtgaacttctccgcccgaaccgttatctcgcccgac
ccgaccctctcgctcaacgaggtcggcgttccggatcgggttgcctcggagatgacccag
acgatgctcgtcaccgagcgaaacgtcgaagaggccagacggtacgtcgcgaacggaccg
aacacgcaccccggtgcgaactacgttcgtcgccccgacggtcgccgcctcaaggtcacg
gagaaaaactgtgaggcactcgctggaatgaccgaagagtccgatgcggaaggcatccag
acggtcggcccgggctgggaggtcaaccggcacctcatcgacggcgacatcatcatcttc
aaccggcagccgtcgctgcaccggatgtcgatcatggcccacgaggtcgtggtcatgccg
tacaagacgttccgtctcaacaccgtcgtctgtccgccgtacaacgccgacttcgacggc
gacgagatgaacatgcacgcgctgcaaaacgaggaggctcgagcggaggcccgggtcctc
atgcgcgtgcaagaacagatcctctcgccgcgcttcggtgagaacatcatcggcgcgatc
caggaccacatctcgggaacgtacctgctcacccacgacaatccacggttcaacgagacg
caggcgctcgacttgctccgtgcgacgcggatcgacgaactgcccgaacccagcggcatc
gacgacgagggagagccgttctggaccggacgcgacgtcttctccgaactgctcccggac
gatctcgatctcgagttcatcggaacgatcggcgaggacgtgatcatcgaggacggacag
ctcgttgagggcaccatcgccgaagacgaggtcggcgagttcggcggcgagatcgtcgat
acgatcacgaagcagtacggaaacacccgctctcgcgtcttcatcaacgaaatttcgacg
ctggcgatgcgtgcgatcatgcacttcgggttctcgatcgggatcgacgacgagaccatc
ccctcggaggctcaagaccgcattgacgagacgattctcgatgcgaacgaccgcgtcgag
gaactcatcgacgcttacgacgcgggcgaactcgagagcctgcccggccggacgatcgac
gagaccctcgagatgaagatcatgcagacgctctcgcgggcgcgtgacaacgcgggtaac
atcgcggaggaacactttaacgaggataaccccgcggtcgtcatggccgaatccggagcg
cgtggctcgatgcttaacctgacccagatggccggctgtgtcggtcagcaggcagttcgg
ggagagcgtatcaaccgcggctacgaagaccggaccctctcgcactacgaaccgaacgac
ctctccgcggaggcccacgggttcgtcgaaaactcttacacgagcggactgactccgcgg
gagttcttcttccacgcgatgggtggccgcgaggggctggtcgatacggcagtccggacc
tcgaagtccggatacctccagcgccgattgatcaacgccctctcggaactcgagacccag
tacgacggaaccgttcgcgacacgagcgatacgatcgtccagttcgagttcggcgaggac
ggcacttcgccggtcaaggtcggctccgacgaggaacacgttgtggacgtcgaagggatc
gccgatcgcatcgttgaagccgagttcgaggacgacgccgagaaggcggcgttcatcggg
ccgaagcaggagacgacgaacctctccgagcacgcggacagtcgtcgactgcccgacggc
gcggaggtgagctccgatgactga
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