Halostagnicola larsenii: HALLA_05445
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Entry
HALLA_05445 CDS
T03008
Name
(GenBank) helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hlr
Halostagnicola larsenii
Pathway
hlr03022
Basal transcription factors
hlr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HALLA_05445
09124 Replication and repair
03420 Nucleotide excision repair
HALLA_05445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlr03021
]
HALLA_05445
03036 Chromosome and associated proteins [BR:
hlr03036
]
HALLA_05445
03400 DNA repair and recombination proteins [BR:
hlr03400
]
HALLA_05445
Enzymes [BR:
hlr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HALLA_05445
Transcription machinery [BR:
hlr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HALLA_05445
Chromosome and associated proteins [BR:
hlr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HALLA_05445
DNA repair and recombination proteins [BR:
hlr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HALLA_05445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
ATPase
AAA_34
DUF815
PhoH
GvpD_P-loop
ArsA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AHF98405
UniProt:
W0JI58
LinkDB
All DBs
Position
138018..140192
Genome browser
AA seq
724 aa
AA seq
DB search
MAETDGYMRFFPYEEPYENQREAMERMYNSLVRGQNVLFEGACGTGKTLSSLVPALEVAR
EQDKTVVITTNVHQQMRQFVAEARAIAAEESIRTIVFKGKASMCHIDVGYEECQALRDNT
RSLVETERDHDQLEQRQRELLAESREGDSSAAEARSAVMDELEELEEDLEDLDEQNVCEY
YHNNLTQNTDEFFGWLFEDVRTPDQIYEYADERNLCGYELLKEGIEGVDLVVCNYHHLLD
SGIREQFFRWLGRDPSDVIAVFDEAHNVEDAAREHATRTCTERTFESALDELADTDDPLA
EPARNVISAFATALVDTYEDSFGFGRREQIGENWEDVPISNDEGRDDLAIAFLQRYSGQG
IDTDLEAALKLGKRLDEQYEEEYREGETATRTECQTLQAASFVSAWMDEGTNQGLYPVVS
VRRDAGTGEVYGRAELYSCLPREVTGELFEEVHSTVLMSATLQPFDVTENVLGLAEPVTM
AYGLQFPAENRRTYAVETPPLFSSDRDDLEVQTAVTDAIADAVRLTPGNTLAFFPNYAEA
TRYADRLERRSPAASVYSDEPGVSVEDLRRKFVADDDAVLCTSLWGTLAEGVSFDGDDAT
TVLVVGVPYPHLDDRAEAVQEAYDAAFDGTDTGWRYAVEIPTVRKTRQALGRVIRSPEDV
GVRAVLDRRYSSRAKSDLGKYSVNSTFPIEEREELIDIDPEKLKFAMLNFYADHDRYDGD
PPEP
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtggccgagactgacgggtacatgcgctttttcccctacgaagagccgtacgaaaaccag
cgggaagcgatggagcggatgtacaactcgctggttcgcggccagaacgtgctcttcgag
ggagcctgcggaacgggaaagacgctgtcgtcgctcgtgccggccctcgaggtcgcccgc
gagcaggacaagacggtcgtcatcacgacgaacgtccaccagcagatgcgccagttcgtc
gccgaggcgcgagcgatcgccgccgaggagtcgattcggacgatcgttttcaaaggcaaa
gcctcgatgtgtcacatcgacgtcggctacgaagagtgccaggcgttgcgtgacaacacc
cgctcgctcgtcgaaaccgaacgcgaccacgaccaactcgagcaacgccagcgcgaactc
ttagcagagagccgggagggcgactcgagcgcagcggaggcccgaagcgcggtgatggac
gaactcgaggaactcgaggaggatctcgaagacctcgacgagcagaacgtctgtgagtac
taccacaacaacctcacccagaacaccgacgagttcttcggctggctcttcgaggacgtg
cggacgcccgatcagatctacgagtacgccgacgagcggaacctctgcgggtacgaactc
ctcaaagaggggatcgagggcgtcgatctggtcgtctgtaactatcaccacctgctggat
tcgggcattcgagagcagttcttccggtggctcggacgcgatccgtcggacgtgatcgcc
gttttcgacgaggcgcacaacgtcgaggacgccgcccgcgagcacgcgacgcgaacctgc
acggaacggactttcgaatccgcgctcgacgaactcgcggataccgacgatccgctggca
gaacccgcacggaacgtcatcagcgcgttcgcaaccgccctcgtcgacacctacgaggac
tcgttcggattcggtcgacgcgagcagatcggcgagaactgggaggacgtgccgatcagc
aacgacgagggccgagacgatctagcgatcgccttcctgcagcgatactccggccagggc
atcgacacggatctcgaggccgcgttgaaactcggcaaacgactcgacgagcagtacgag
gaggagtatcgggagggcgagacggcgaccagaacggagtgtcagacgttacaggccgca
tcgttcgtcagcgcgtggatggacgaggggacgaaccagggactgtacccggtcgtctcg
gtccgtcgggatgcgggaaccggcgaggtctacggccgcgccgaactgtacagctgtctc
ccgcgagaagtgacgggcgaactgttcgaggaggtccactcgacggtgttgatgagcgcg
acgctccagcccttcgatgtcacggagaacgtcctcggtctcgccgaaccggtgaccatg
gcctacggcctccagttccccgcggagaatcgccgaacgtacgccgtcgaaacgccgccg
ctgttctcgtcggaccgagacgatctcgaggttcagacggccgtcaccgacgcgatcgcc
gacgcggttcggctcacccccggaaacacgctcgcgttcttccccaactacgccgaggcg
acgcggtacgccgaccgactcgagaggcggtcccccgccgcgtcggtctacagcgacgaa
ccgggcgtatccgtcgaagacctgcgccggaagttcgtcgcggacgacgacgctgtgctc
tgtacctcgctgtggggaacgctcgcggaaggcgtgagcttcgacggcgacgacgccacg
acggtcctcgtcgtcggcgtgccgtacccgcacctcgacgaccgcgccgaggcggtacag
gaggcctacgacgcggccttcgacggcaccgacacgggctggcgctacgccgtcgaaatc
ccgaccgtcagaaagaccagacaggcgctcggtcgggtgattcgctcgcccgaagacgtc
ggcgtccgggccgtcctcgaccgccggtactcctctcgagcgaagtcggatctcggcaag
tacagcgtcaacagtacgtttccgatagaggaacgcgaggaactgatcgatatcgatccc
gagaaactcaagttcgcgatgttgaacttctacgcggatcacgatcggtacgacggtgac
ccgcccgagccgtaa
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