Halostagnicola larsenii: HALLA_06310
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Entry
HALLA_06310 CDS
T03008
Name
(GenBank) replication protein A
KO
K07466
replication factor A1
Organism
hlr
Halostagnicola larsenii
Pathway
hlr03030
DNA replication
hlr03420
Nucleotide excision repair
hlr03430
Mismatch repair
hlr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HALLA_06310
03420 Nucleotide excision repair
HALLA_06310
03430 Mismatch repair
HALLA_06310
03440 Homologous recombination
HALLA_06310
03460 Fanconi anemia pathway
HALLA_06310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlr03000
]
HALLA_06310
03032 DNA replication proteins [BR:
hlr03032
]
HALLA_06310
03400 DNA repair and recombination proteins [BR:
hlr03400
]
HALLA_06310
Transcription factors [BR:
hlr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
HALLA_06310
DNA replication proteins [BR:
hlr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
HALLA_06310
DNA repair and recombination proteins [BR:
hlr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
HALLA_06310
MMR (mismatch excision repair)
HALLA_06310
DSBR (double strand breaks repair)
HR (homologous recombination)
HALLA_06310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
Ssb-like_OB
OB_MEIOB_N
HROB
Motif
Other DBs
NCBI-ProteinID:
AHF98514
UniProt:
W0JMW9
LinkDB
All DBs
Position
complement(299646..301103)
Genome browser
AA seq
485 aa
AA seq
DB search
MSDIEGVYEDLEADVSLEEFREAVEEKVEQMGGLADEETAAMLIAHEVGESEVGGVADIE
PGMEEAKFVAKVTSIGELRTFERDGEDEDGRVVNVEVADETGAVRASLWDDHAEAAIEQL
EEGQVLRIKGRPKEGFSGVEVSVDDLEPDDDTEIDVQVSDVHTVESLSLGISNVNLVGKV
LDTDSVRTFDRDDGSEGKVSNLTLGDETGRIRVTLWDEQAERATELEADATVEVVDGYVR
ERDGTLELHVGNRGALEEVDEEVEYVPESTPIEDLEIDQVVDIAGVVRSADPKRTFDRDD
GSEGQVRNIRVQDATGDIRVAMWGDKADLDIGPGDEVALADVEIQDGWQDDLEASAGWRS
TITVLDSEESGSESVDSSDTESAGLSSFAESDDKSGDEDETPSDTAATGESADDDLSDNG
SATDEASDGSETEFTGVVVQAGNPVVLDDGDTTMSVETSADVGLGEEVTARGVIRDGRLE
ANDVF
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatcgagggggtttacgaagacctcgaggcggacgtctcgctcgaggagttt
cgcgaggccgtcgaggagaaggtcgagcagatgggtgggctcgcggacgaggagacggcg
gcgatgctcatcgctcacgaagtcggcgaaagcgaggtcggcggcgtcgctgacatcgag
cccggcatggaggaagcgaagttcgtcgcgaaagtgacgagcatcggcgaactgcgaacg
ttcgaacgcgacggcgaagacgaggacggccgcgtcgtcaacgtcgaagtcgccgacgag
accggggccgtcagagcctcgctgtgggacgaccacgccgaggccgcgatcgagcaactc
gaggaagggcaggtgctgcggatcaaaggtcgaccgaaagaaggattcagcggcgtcgaa
gtgagcgtcgacgacctcgagccggacgacgacaccgaaatcgacgtgcaggtctcggac
gtacacaccgtcgaaagcctctcgctcggcatttcgaacgtcaacctcgtcgggaaggtt
ctcgacaccgattccgtccgaacgttcgaccgcgacgacggttcggaggggaaggtttcg
aacctcacactgggcgacgagaccggacgcatccgggtgacgctctgggacgaacaggcc
gagcgcgcgaccgaactcgaggcagacgcgacggtcgaggtcgtcgacggctacgttcgg
gagcgcgacggcaccctcgagctccacgtcgggaaccgtggggcactcgaggaggtcgac
gaggaggtcgagtacgtccccgaaagcacgccgatcgaagacctcgagattgatcaggtg
gtcgacatcgcgggcgtggtcagatccgcggatccaaagcgaaccttcgatcgagatgac
ggctccgagggacaggtccggaacatccgcgtacaggatgcgacgggcgacattcgagtc
gcgatgtggggcgataaggccgatctcgatatcggccccggcgacgaggtcgcgctcgca
gacgtcgagattcaggacggctggcaggacgacctcgaggcctctgcaggctggcgctcg
acaatcaccgtgctcgactccgaagagagtgggtcggaatcggtcgattcgtccgacacc
gaatcggccggcctgtcgtcgttcgccgagagcgacgataagagcggggacgaggacgag
acgccgagcgacactgccgcgaccggcgaatcagcggacgacgacctatcggacaacggg
tcggcgaccgacgaggcaagtgacggatcggaaacggagtttactggcgtcgtcgttcag
gcggggaatccggtcgtcctcgacgacggcgacacgacgatgagcgtcgaaaccagcgct
gatgtcggactcggcgaagaggtcactgcccgaggtgtgatccgtgacggccgtctcgag
gcgaacgacgtattctga
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