KEGG   Halostagnicola larsenii: HALLA_09965
Entry
HALLA_09965       CDS       T03008                                 
Name
(GenBank) endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
hlr  Halostagnicola larsenii
Pathway
hlr03030  DNA replication
hlr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hlr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HALLA_09965
   03410 Base excision repair
    HALLA_09965
   03450 Non-homologous end-joining
    HALLA_09965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hlr03032]
    HALLA_09965
   03400 DNA repair and recombination proteins [BR:hlr03400]
    HALLA_09965
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hlr04147]
    HALLA_09965
DNA replication proteins [BR:hlr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HALLA_09965
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HALLA_09965
DNA repair and recombination proteins [BR:hlr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HALLA_09965
Exosome [BR:hlr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   HALLA_09965
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-ProteinID: AHF99123
UniProt: W0JKJ1
LinkDB
Position
976900..977877
AA seq 325 aa
MGNAALRDIAVIEEIPFDDIEGVVAVDAHNWLYRYLTTTVKWTNSDAYTTGDGTEVANLI
GIVQGLPKFFENDVTPVMVFDGGPSELKDDEIESRREQRRSYEDQLETAREEGDAVAIAQ
LESRTQRLTPTIQETSRELLGLLDVPVVEAPAEGEAQAAHMVKRGDADYVGSEDYDALLF
GSPLTLRQLTSKGDPELMDLEATLDHHELTLEQLIDAAILIGTDFNEGVRGIGPKTALDA
ITEHGDMWSVLEARGESIEYGDRVRQLFREPNVTDDYEFETTLEPDVEAAQSYVVDEWGV
GANEVERGFERIEESAVQSGLDRWT
NT seq 978 nt   +upstreamnt  +downstreamnt
atgggaaacgctgcacttcgggacatcgccgtcatcgaggagattcccttcgacgatatc
gaaggcgtcgtcgccgtggacgcgcacaactggctgtatcggtatctgacgacgacggtc
aagtggacgaacagcgacgcgtacacgaccggcgacggaaccgaggtcgccaacctgatc
ggcatcgtccagggactccccaagttcttcgaaaacgatgtgacgccggtgatggtcttc
gacggcggcccctccgaactcaaagacgacgagatcgaatcccgccgcgaacagcgacgg
agctacgaggaccaactcgagaccgcccgcgaggagggtgatgcagtcgccatcgcacaa
ctcgagtcgcgcacgcagcggctgacgccaacgattcaagaaaccagccgggaactactg
ggactcctcgacgtaccggtcgtcgaagcgcccgccgagggggaagcccaggcggcgcac
atggtcaaacggggtgacgccgattacgtcggctcggaggactacgacgccctcctcttt
ggctctccgctgaccctccgtcagctgacgagcaagggcgaccccgaactgatggatctc
gaggccaccctcgaccaccacgaactaaccctcgagcaactcatcgacgccgcgattctc
atcgggacggatttcaacgagggcgtcagggggatcggtccgaagacggccctcgacgcg
attaccgaacacggcgacatgtggagcgtcctcgaagcacgcggtgagagcatcgagtac
ggcgaccgggtccgacagctgtttcgcgagccaaacgtcaccgacgactacgagttcgaa
acgaccctcgagccggatgtcgaagccgcgcaatcgtacgtggtcgatgaatggggcgtc
ggtgcgaacgaagtcgagcggggcttcgagcgaatcgaagaaagcgcggttcagtcggga
ctggatcgctggacgtaa

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