Halostagnicola larsenii: HALLA_15025
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Entry
HALLA_15025 CDS
T03008
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hlr
Halostagnicola larsenii
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlr03016
]
HALLA_15025
Enzymes [BR:
hlr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HALLA_15025
Transfer RNA biogenesis [BR:
hlr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HALLA_15025
Prokaryotic type
tRNA splicing ligases
HALLA_15025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHF99906
UniProt:
W0JRJ7
LinkDB
All DBs
Position
complement(1900864..1902363)
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AA seq
499 aa
AA seq
DB search
MTTFDANGVTLEQVREYVWEVKREGSMRTPARVLASEALLEEISQDKTLEQLQNATHLPG
MTNYAICMPDGHQGYGFPVGGVGALDAEDGCISPGAVGYDINCGVRMMRTNLTYNEVEGH
EEELVDSLFTNIPSGLGGGGIVETGIDDVEEILARGVDWALENGHAVEADLLHCEDEGRR
EGADPSKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFDDQVGEAFGLKEDQIVVLIHC
GSRGLGHQTCNDYLRKIERQHQGLLEQLPDKELAAAPAGSQLAEDYYGAMNAAINFAWVN
RQLIMHRTRKVFERVFGRSWEDMEMDLLYDVAHNIAKKETHTVGSHGRPAGDGDAVETEQ
RELFVHRKGATRAFPKGHPEVPAAYRDVGQPVIIPGSMGAGSYVLRGGEASMDLTFGSTA
HGAGRLMSRTQAKNDYWGGDVKQELEERDQIYVKAQSGATIAEEAPGVYKDVDEVVRVSD
ELGIGDKVARTFPVCNIKG
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgactacgttcgacgcaaacggcgtcactctcgagcaggttcgagagtacgtctgggaa
gtgaaacgggagggatcgatgcgaacgcccgcgcgagtgctcgcgagcgaggcgttgctc
gaggagatcagtcaggacaaaacgctcgagcagctgcagaatgcgacgcacctgccgggg
atgacgaactacgcgatctgtatgcccgacggccaccagggctacggcttccccgtcggc
ggcgtcggcgcactcgatgcggaggacggctgcatttcgccgggggctgtcggctatgac
atcaattgtggcgtccggatgatgcggacgaatttgacctataacgaagtcgaaggccac
gaagaagaactcgtcgactcgttgtttacaaatattccgtcaggtttgggcggcggcggc
atcgtcgaaactgggatcgacgacgtggaggaaatcctcgcccgcggggtcgactgggcg
ctcgagaacggccacgccgtcgaggcggaccttctccactgcgaggacgaagggaggcga
gagggggcagatccctcgaaggtctcccagaaggccaaagaccgcggaaagaaccagatc
ggctcgctcggctcgggcaatcacttcctcgaggtgcagcgcgtgaccgacgtgttcgac
gaccaggttggcgaggcgttcggcctcaaggaggaccagatcgtcgtcctgatccactgt
ggctctcgagggctcggccaccagacgtgcaacgattatctgcgaaagatcgaacggcaa
caccaaggactgctcgagcagttgccggacaaggaactggcggcggcacccgcgggctcg
caactcgccgaggactactacggcgcgatgaacgccgcgatcaacttcgcgtgggtcaac
cgccagttgatcatgcaccgcacgcggaaggtcttcgagcgcgtcttcggtcggtcctgg
gaggacatggagatggacctgctctacgacgtggctcacaacatcgcgaagaaggagacg
cacaccgtcggatcgcacgggcgaccggcgggggacggcgacgccgtcgaaaccgaacag
cgcgaactgttcgtccaccgaaagggcgcgactcgagcgttcccgaagggccatcccgaa
gtacccgcggcctaccgggacgtcggccagccggtgatcatccccggcagcatgggtgcc
ggcagctacgtcctccggggcggcgaggcctcgatggatctgacgttcgggtcgacggcc
cacggtgcggggcggctgatgagccgaacgcaggcgaaaaacgactactggggcggcgac
gtaaagcaggaactcgaggaacgagaccagatctacgtcaaggcccagtccggggccacg
atcgccgaggaagcgccgggcgtctacaaggatgtcgacgaggtcgtccgcgtctcggac
gaactggggatcggcgacaaagtcgcgcggacgtttccggtgtgtaacatcaaagggtag
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