Halostagnicola larsenii: HALLA_16095
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Entry
HALLA_16095 CDS
T03008
Name
(GenBank) transcription initiation factor IIB 2
KO
K03124
transcription initiation factor TFIIB
Organism
hlr
Halostagnicola larsenii
Pathway
hlr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HALLA_16095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlr03021
]
HALLA_16095
Transcription machinery [BR:
hlr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HALLA_16095
Prokaryotic type
Archaeal type
TFB
HALLA_16095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Sigma70_r4
HTH_24
HTH_Tnp_ISL3
DZR
TrmB
HTH_DeoR
Cas12f1-like_TNB
Zn_ribbon_8
Trm112p
DUF7129
DUF5795
Motif
Other DBs
NCBI-ProteinID:
AHG00096
UniProt:
W0JN03
LinkDB
All DBs
Position
complement(2089428..2090402)
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AA seq
324 aa
AA seq
DB search
MTDTTIRTYSRESETEEETSTNADEQERCPECGGRVVSDAEHAETVCEDCGLVVEEDEID
RGPEWRAFDAAEKDEKSRVGAPTTNMMHDQGLSTNIGWQDKDAYGNSLSSRQRQKMQRLR
TWNERFRTRDSKERNLKQALGEIDRMASAIGLPENVRETASVIYRRALEEDLLPGRSIEG
VATASLYAAARQAGTPRSLDEISAVSRVDKMELTRTYRYIIRELGLEVQPADPEQYVPRF
ASGLDLSEETERMARELLDAAREEGVHSGKSPVGLAAASVYAAALLTNEKVTQNEVSEVA
NISEVTIRNRYKELLEASDTATPA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgactgatacaacgattcgaacgtactcacgcgaaagtgagacagaagaggaaacgagt
acaaacgccgatgagcaagagcgctgtccggagtgtggtggacgggtcgtctccgatgcg
gaacacgccgagacggtctgtgaggactgtggcctcgtcgtcgaagaggacgagatcgac
cgcggtccggagtggcgcgcgttcgacgccgccgagaaagacgagaagtcccgcgtcggc
gcgccgaccacgaacatgatgcacgaccagggcctgtcgacgaacatcggctggcaggac
aaagacgcctacggcaactccctgagctctcgccagcgtcagaagatgcagcgcctgcgc
acgtggaacgagcgcttccgaacgcgagactccaaggagcgaaacctaaagcaggcgctc
ggcgagatcgatcggatggcgagtgcgatcggcctccccgagaacgtccgcgagacggcg
tcggtcatctaccgccgcgcgttagaggaggacctcctccccggacgctcgatcgagggc
gtcgcgaccgcctcgctgtacgcggccgctcgacaggccggaacgccgcgaagcctcgac
gagatctcggcggtcagccgcgtcgacaagatggagttaacccggacctaccgctacatc
atccgggaactcggactggaagtccagccggcggatccagaacagtacgttccccgattt
gccagcggactcgacctctccgaggagaccgagcgaatggctcgagaactcctcgatgcc
gcccgcgaggaaggcgtccacagcggcaaatcgcccgtcggactcgccgcggcgtcggtc
tacgccgccgcactgttgactaacgagaaggtcacccagaacgaggtcagcgaagtggcg
aacatctcggaagtaacgattcgaaaccgctacaaggaactgcttgaagcctcggatacg
gcgacgccggcctaa
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