Halostagnicola larsenii: HALLA_17105
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Entry
HALLA_17105 CDS
T03008
Name
(GenBank) RNA polymerase sigma70
KO
K09714
HTH-type transcriptional regulator, fmd operon transcriptional regulator
Organism
hlr
Halostagnicola larsenii
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlr03000
]
HALLA_17105
Transcription factors [BR:
hlr03000
]
Prokaryotic type
Helix-turn-helix
Other families
HALLA_17105
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFX_C
Sigma70_r4
HTH_31
GerE
Sigma70_r4_2
HTH_3
MarR_2
HTH_Crp_2
Trp_repressor
HTH_23
DUF7343
UPF0122
HTH_7
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AHG00261
UniProt:
W0JNH2
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All DBs
Position
complement(2288259..2288717)
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AA seq
152 aa
AA seq
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MIDDVEALLEDIGFEAETSVLTHRQAQVLALRERDVSQADIADALGTSRANVSSVESSAR
ENLSKARETVAFAEALRAPVRVRVPAGTDLYDVPELVYDACDENGVKVDHTAPDLMKVVS
DAAGPAVKGRKISTPLIVGVTSSGLVRVRHRE
NT seq
459 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgacgtcgaagcgttgctcgaggatatcgggttcgaagccgagacgagcgtc
ctgactcacagacaggcacaggtcctcgcgttgcgagagcgtgacgtttcccaggccgat
atcgccgacgcgctcggcacctcgcgggcgaacgtctcgtcggtcgaatccagcgctcga
gagaacctgtccaaggcccgcgagacggtcgccttcgcggaggcgctccgcgcaccggtt
cgggttcgggttccggccggaacggacctctacgacgtgcccgaactggtctacgacgcg
tgcgacgaaaacggggtcaaagtcgatcacaccgcccccgatctgatgaaggtcgtcagc
gacgccgccggacccgcggtcaaagggcggaagatttccacgccgctcatcgtcggcgtg
acctcgagcggactcgttcgcgtgcgtcaccgggagtga
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