Halostagnicola larsenii: HALLA_19110
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Entry
HALLA_19110 CDS
T03008
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hlr
Halostagnicola larsenii
Brite
KEGG Orthology (KO) [BR:
hlr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlr03016
]
HALLA_19110
Enzymes [BR:
hlr01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
HALLA_19110
Transfer RNA biogenesis [BR:
hlr03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
HALLA_19110
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
AHG00585
UniProt:
W0JTL2
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All DBs
Position
complement(2671240..2672286)
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AA seq
348 aa
AA seq
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MTLEGRFDEDAGVVRVGADARQRYHDARGYGYPLEGNEIALAPVEAAHLLYRGDLEAVVD
DGDRLAFRDLLAREPGTDFGVRFLVYADLRSRGFYLSPAAEPWVTDPPDGDFAVFPRGKG
PGDGEVAYALRVIGERTDIPAAALEESVLAVVDEESEITYFDVNPREPTGSSATIDSVRG
VDADLLADRVVVWEPPADLYETAFYGQPLEGREYDRPTLQCSLLEAAHLAERGVLDLESS
VVRERGRAVEGERFDRRLRVYETLRGRGVVPKTGYKFGADFRTYADVDSVDNLGHSELLI
RVLSGDHVFEPRDLALDVRLAHGVRKTMVFALVDGESVEWWSLERLTP
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgacactcgagggtcggttcgacgaggatgcgggcgtcgtcagggtcggcgcggacgcg
cgccagcgctatcacgacgcacggggctacggctatccgctcgagggcaacgaaatcgcg
ctcgcgcccgtcgaagcggcacacttgctctatcgcggcgatctcgaggcggtcgtcgac
gacggggaccgactcgcgttccgggacctgctcgcccgcgagcccggcaccgatttcggg
gttcgattcctcgtgtacgccgacctgcgctcgaggggtttctatctctcgcccgctgcg
gagccgtgggtgaccgatccgcctgatggcgattttgcggtgtttccccgcggcaaggga
cccggcgacggcgaggttgcctacgcgctgcgagtgatcggcgagcgaaccgacattccg
gccgcggccctcgaggagagcgtcctcgccgtcgtcgacgaggagagtgagatcacgtac
ttcgacgtgaacccgagggagccgaccggaagctccgcgacgatcgattcggtccgggga
gtcgacgccgacctgctcgccgatcgggtcgtcgtctgggagccgccggcggatctctac
gagacagccttctacggccaaccgctcgagggccgggaatacgaccggccgacgctgcag
tgttccctgctcgaggcggctcacctcgcggagcggggggtcctcgacctcgagtcgtcg
gtcgttcgcgagcgggggcgggcggtcgaaggcgagcgattcgatcggcgacttcgggtg
tacgaaacgttgcgcgggcgcggcgtcgttccgaagacgggctacaagttcggggctgac
tttcggacctacgccgacgtcgattcggtcgataatctgggccactccgagttgctgatc
cgggtgctctccggggatcacgtcttcgaaccgcgagacctcgcgcttgacgttcggctc
gcccacggcgttcggaagacgatggtgttcgcgctcgtggacggcgagtcggtcgagtgg
tggtcgctcgagcgacttacaccgtag
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