KEGG   Halostagnicola larsenii: HALLA_20500
Entry
HALLA_20500       CDS       T03008                                 
Name
(GenBank) helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
hlr  Halostagnicola larsenii
Brite
KEGG Orthology (KO) [BR:hlr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hlr03400]
    HALLA_20500
Enzymes [BR:hlr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HALLA_20500
    5.6.2.6  RNA 3'-5' helicase
     HALLA_20500
DNA repair and recombination proteins [BR:hlr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    HALLA_20500
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C WH_Lhr ResIII AAA_25 HypA Cas3-like_C_2 Zn_ribbon_8 Zn_ribbon_PaaD
Other DBs
NCBI-ProteinID: AHG02285
UniProt: W0JYM7
LinkDB
Position
unnamed3:complement(140922..143747)
AA seq 941 aa
MIDGDVAAFTHLGETVRDALSERGFSTPTAPQRLAIPPLSAGDDTLVIAPTGSGKTETAM
LPVFDDLVADPPDGFGALYVTPLRALNRDMRDRLEWWGEYLGLEVDVRHGDTTQYQRGKQ
AENPPDVLVTTPETLQAMLTGERLREALEDVSHVVIDEVHELAASKRGAQLSIGLERLED
LAGSMQRIGLSATVGDPREVGQFLTGGRPCTIQEIDVGSNVDVSVREPEVTDEDERLSGK
LMTSAETASHVRLIRDIVADHESTLIFVNTRQTAEALGSRFTELELPIGVHHGSLSKEAR
IDVEDRFKRGELDALLCTSSMELGIDVGRVDHVVQYQSPRQVARLLQRVGRAGHRRDEVS
SGTVVTTRPDDTFEALAIARRAREGEVEPASIHEGSLDVVANQIPGFVQSRGSTFVEDAY
ETIRGAYPFRDLGEETFRDVLSELHRNRIVWFDESEDRIETTGGTWQYVYANLSMIPDEA
TYEVHDIASGKQIGTLDERFVVNFAAPGEIFVQRGEMWRIAEIDDDEDEVKVSPIEDPAG
EIPSWIGQEIPVPYDVAQEVGELRGVAGPQLEAGADASGVARELAGRYPADHHTLSEALS
QLEDHVETETAMPTRDRIVIERQGRTVVLNAPFGHTTNETLGRMLSSLLGQQSGSSVGLE
TDPYRIELECPGSVATSDVLDVLEETDPDHVESILELGLKRSDALAFRLSQVSAKFGALK
RWQGSGRLSNDRLLSALEDTPMYEESIREVFHEDLDVDRASRVLEAIQSGSLEVVTTRGR
TPVGLGGRSSGKELLAPENADASVIKTVRERIQNDRIILLCTHCTEWKVKTKVGRVREQP
ECPECGSTRIAALNPWAEEVVDAVRAQEKDDEQKSMTERAYRSASLVQSHGKQAVIAMAA
RGVGPHNAAQIINKLRENEDEFYRDILSKERQYARTQAFWD
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgatcgacggggacgttgcggcgtttacccacctcggtgagacggttcgcgatgcgctt
tccgaacgcggattttcgacgccgacagcaccgcaacgactggcgattccgccgctttcg
gccggtgacgatacgctcgtcattgcacctaccgggagcggcaaaaccgagaccgcgatg
ctccccgtcttcgacgacctcgtcgccgatccacccgacgggttcggcgcgctctatgtc
acccccctccgcgcgctgaaccgcgatatgcgcgaccgactcgagtggtggggcgagtac
ctcggcctcgaggtcgacgttcgacacggcgacacgacccagtaccagcgggggaagcag
gccgagaacccgcccgacgttctcgtcacgacgcctgaaaccctccaggcgatgctgacc
ggcgagcgtcttcgggaggcgctcgaggacgtttcccacgtcgtgatcgacgaggtccac
gaactcgccgcctccaagcgaggcgcacagctttcgatcgggctggaacgactcgaggac
ctcgcgggcagtatgcagcgaatcgggctctcggcgaccgtcggagatccgcgcgaggtc
gggcagtttctgaccggcggacggccctgtacgattcaggaaatcgacgtcggcagcaac
gtcgacgtgtccgtccgcgaacccgaggtaaccgacgaggacgaacgactctccggaaaa
ctcatgaccagcgccgagacggcgagtcacgttcggctgatccgggacatcgtggcggat
cacgaatcgacgctcatcttcgtcaacacccgccagactgccgaagcgctcggctcgagg
ttcaccgaactcgagcttccgatcggagtccaccacggatcgctctcgaaggaggcgcgg
atcgacgtggaggatcggttcaaacgcggcgaactcgacgcgctgttgtgtacctcgtcg
atggagctcggcatcgacgtggggcgggtcgaccacgtcgtccagtaccagagcccgcgc
caggtcgcgcggctcctccagcgggtcgggcgagcgggccaccggcgggacgaggtctcg
agcggaaccgtcgtcacgaccagacccgacgacacgttcgaggccctcgcgattgcgcgg
cgggcccgcgagggggaggtcgaaccggcgtcgatccacgagggaagcctcgacgtggtc
gcgaaccagatacccggattcgtccagagtcgcggctcgacgttcgtcgaggacgcctac
gagacgatccgcggggcctacccgttccgcgacctcggcgaggagacgttccgggacgtg
ctctcggaactgcaccgcaatcggatcgtctggttcgacgagagcgaggatcggatcgag
acgaccgggggcacctggcagtacgtctacgcgaacctctcgatgatccccgacgaggcg
acctacgaagttcacgacatcgcttccgggaaacagatcgggacgctcgacgagcgattc
gtcgtcaacttcgccgcgccgggcgagattttcgtccagcgcggcgagatgtggcggatc
gccgaaatcgacgacgacgaggacgaggtgaaagtcagcccgatcgaggacccggcgggc
gagatcccctcctggatcggccaggagatccccgtcccctacgacgtcgcccaggaggtc
ggcgagcttcgaggcgtcgcggggccgcaactcgaggccggagccgacgcgtccggcgtc
gcgcgcgaactcgcgggtcgataccccgccgaccaccacacgctgtcggaagctctctcc
cagctcgaggaccacgttgaaaccgagacggccatgccgacgcgggatcggatcgtaatc
gagcgacagggtcggacagtcgtgctgaacgcgccgttcgggcacacaaccaacgaaacg
ctcggacggatgctctcctcgcttctcggccagcaaagcggctcgagcgtcggcctcgaa
accgatccgtatcggatcgaactcgaatgtccggggtcggtcgcgacgagcgacgttctc
gacgttctcgaggaaactgatccggaccacgtcgagtcgatactcgagctggggctcaag
cgatcggacgcgctcgcgttcaggctctcgcaggtctccgcgaagttcggcgcgctcaag
cgctggcaggggtcgggccggctgtcgaacgaccgcctgctgtcagcgctcgaggacacg
ccgatgtacgaggagtcgattcgggaagtgttccacgaggatctggacgtagaccgggcg
agtcgggtgctcgaagcgatacagtcggggtcgctcgaggtggtgacgacgcgcggtcga
acgccagtcggcctcggcggtcgctcctcgggcaaggaactactcgcgcccgaaaacgcc
gacgcgagcgtcatcaaaacggtccgcgaacggatccagaacgaccgcataatcctgctc
tgtacccactgcaccgagtggaaggtcaaaacgaaggtcggacgggtgcgcgagcaaccc
gaatgtcccgagtgcggttcgacccgtatcgcggcgttgaacccgtgggccgaggaggtt
gtcgacgcggttcgagcgcaggaaaaagacgacgaacagaaatcgatgaccgaacgggcc
taccggagtgcgagcctggttcagagccacgggaaacaggccgtgatcgcgatggccgct
cgaggcgttggcccgcacaacgcggcccagatcatcaacaagctccgggagaacgaagac
gagttctatcgggatattctctcgaaggaacgccaatacgctcgaacccaagcgttctgg
gattaa

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