Haloferax larsenii: KU306_01225
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Entry
KU306_01225 CDS
T08379
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hls
Haloferax larsenii
Pathway
hls04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
KU306_01225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hls03019
]
KU306_01225
03009 Ribosome biogenesis [BR:
hls03009
]
KU306_01225
04131 Membrane trafficking [BR:
hls04131
]
KU306_01225
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hls04147
]
KU306_01225
Messenger RNA biogenesis [BR:
hls03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
KU306_01225
Ribosome biogenesis [BR:
hls03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
KU306_01225
Membrane trafficking [BR:
hls04131
]
SNARE
SNARE associated proteins
Others
KU306_01225
Autophagy
Aggrephagy
Other aggrephagy associated proteins
KU306_01225
Exosome [BR:
hls04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
KU306_01225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
AAA_5
RuvB_N
CDC48_2
TIP49
AAA_22
AAA_33
nSTAND3
AAA_2
AAA_14
NPHP3_N
IstB_IS21
AAA_28
RNA_helicase
AAA_7
Mg_chelatase
Sigma54_activat
AAA_18
ABC_tran
DUF815
ATPase
NB-ARC
AAA_3
AAA_17
Zeta_toxin
Parvo_NS1
SLFN-g3_helicase
AAA_11
AAA_24
PhoH
AAA_lid_PRS2_C
TsaE
AAA_30
AAA_19
bpMoxR
NACHT
Vps4_C
Zot
DUF6985
Motif
Other DBs
NCBI-ProteinID:
UVE50557
LinkDB
All DBs
Position
223261..225489
Genome browser
AA seq
742 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGKTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVSIGERVTIRKAEAKKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLISVETKPEGVVLVTEDTEVDLREEPISGFE
KTGGGITYEDIGGLTNEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLA
RAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEARGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEE
GRKEILQIHTRGMPLSDDVNLDTLADDTHGFVGADIEALTKEAAMKALRRYLPEIDLDRE
DIPPSLIDRMVVKNDDFGGALGEVEPSAMREVLVEIPKVTWEDVGGLEDPKQKVKESVEW
PLVTPEKFDRMGIEAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDALAPARGNDMGNNVSERVVNQLLTELDGLEDAGNV
MVIAATNRPDMIDPALIRSGRFDRLVLIGQPEEEGREQILDIHTQSSPLAPDVSLREIAE
ITDGYVGSDLESICREAAIEALRESDDAEEIEMRHFRKAMESVRPTITEDLMRYYEEIQD
QFKGGSREGLSPDTRDGRIGFQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactcgaagtggcgaaggcgtacccgaacgactcggggcgcggtatc
gcccgtcttgacccggacaccctgctccatctcaagctctcaccgggcgacatcatcgag
atagaaggagggaagacgaccgccgcgaaggtgtggcgggcagaccggcaagactggaat
acggatacggttcgcatcgacggattcactcggcagaacgccgacgtgagcatcggcgag
cgcgtgaccatccggaaagcagaggccaagaaggccgacaagctcgtgctcgcgccgccg
gaggaggcgagcgtgcagttcggctccgacgcggccgggatggtcaaacggcagattctc
aagcggcccgtggtcgaacgcgacatcgtcccggtgatgtcgagtacgaaccacccgttc
atgcggtcgccgggacaggccattccgctcatctcggtcgagacgaagcccgaaggcgtc
gtcctcgtcaccgaggacaccgaggtcgacctccgcgaggagccgatttcgggattcgag
aagaccggcggcggaatcacctacgaggacatcggtggcctgaccaacgagattcagcgc
gtccgcgagatggtcgagttgccgatgaagcacccgcaaatcttccaaaagctcggcatc
gagccgccgcaaggggtgctgcttcacggcccgcccgggacggggaagacgctcctcgcc
cgcgcggtcgccaacgagacctctgccagtttcttctctatcgctggcccggagattatc
tcgaagtactacggcgagtccgaacagcaactccgcgagatattcgaggacgccaaagag
gagtcgccgagtatcatcttcatcgacgaactcgactccatcgcgccgaagcgcgaggac
gtgaccggcgaggtcgaacgccgcgtcgtcgcccaactcttgacgatgatggacggcctc
gaagcccggggtcaggtcatcgtcatcgcggcgacgaaccgcgtcgactctgtcgacccc
gcgctgcgtcgtcccggtcgattcgaccgcgaaatcgaaatcggcgtgcccgacgaggag
ggccgcaaggagattctccagattcacacccgcggcatgccgctttcggacgacgtgaac
ctcgacacgctggccgacgacacccatggcttcgtcggtgccgacatcgaggcgctgacc
aaggaggcggcgatgaaggcattgcgccgctacctgccggaaatcgacctcgaccgcgag
gacatcccgccgagtctcatcgaccggatggtcgtcaagaacgacgacttcggcggtgcc
ctcggtgaggtcgaaccctcggcgatgcgcgaggtgctcgtcgagattccgaaggtcacg
tgggaggacgtgggcggtctcgaagaccccaaacagaaggtcaaagagagcgtcgagtgg
ccgctcgtcactcccgagaagtttgaccgcatgggcatcgaggcaccgaaaggcgttctc
ctctacggcccacccgggacggggaagaccctcatcgcgaaggccgtcgccaacgagacg
aacgcgaacttcatctcggtgcgcgggccgcaactgctgtcgaagtgggtcggtgagtcg
gagaaggcgattcggcagaccttccgcaaggcgcggcaggtgtcgccgaccatcatcttc
ttcgacgagttggacgccctcgcgccagcccgcggcaacgacatgggtaacaacgtctcc
gagcgcgtcgtcaaccaactcctgaccgagttggacggcctcgaagacgccggcaacgtc
atggtcatcgcggcgacgaaccgcccggacatgattgaccccgcgctcatccgttcgggt
cgcttcgaccggctcgtcctcatcggccagcccgaggaggaaggccgcgagcagattctg
gacatccacacccagtcgagcccgctcgcgccggacgtgagcctccgcgaaatcgccgag
attaccgacggctacgtcgggtcggacctcgaatccatctgccgcgaggcagctatcgag
gcactccgtgagagcgacgacgccgaggaaatcgagatgcggcacttccgcaaggcgatg
gagtcggtgcggccgaccatcacggaagacctgatgcgctactacgaagagattcaagac
cagttcaagggtggctcccgcgagggactctcgcccgacacccgcgacggccgtatcggc
ttccagtaa
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